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Sed0010006 (gene) of Chayote v1 genome

Gene IDSed0010006
OrganismSechium edule (Chayote v1)
Descriptionconserved peptide upstream open reading frame 35
Genome locationLG10:949772..953814
RNA-Seq ExpressionSed0010006
SyntenySed0010006
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA3452198.1 Transcription factor bHLH144 [Gossypium australe]3.5e-1356.98Show/hide
Query:  MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        MPW+        NCVRLV + F              VRM+I VT KRYR  KEVGK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
KAE8647743.1 hypothetical protein Csa_002958 [Cucumis sativus]5.4e-1485.42Show/hide
Query:  MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        M+IG+TGKR R  +E+GKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
Subjt:  MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
KAF4360142.1 hypothetical protein F8388_000011, partial [Cannabis sativa]2.0e-1380Show/hide
Query:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        VRMFI ++ KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
PQQ06331.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus yedoensis var. nudiflora]2.0e-2481.58Show/hide
Query:  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        MPWTSS VNYS NCVRLVVFFR    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
XP_020417230.1 PLASMODESMATA CALLOSE-BINDING PROTEIN 2 [Prunus persica]9.2e-1472.58Show/hide
Query:  SSNCVRLVVFFRVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        + NC  +V    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  SSNCVRLVVFFRVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
TrEMBL top hitse value%identityAlignment
A0A251PKI6 Uncharacterized protein8.4e-1383.33Show/hide
Query:  MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        M IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  MFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
A0A2P5X359 Uncharacterized protein3.8e-1378Show/hide
Query:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        VRM+I VT KRYR  KEVGK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
A0A314YMT4 PLASMODESMATA CALLOSE-BINDING PROTEIN 29.5e-2581.58Show/hide
Query:  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        MPWTSS VNYS NCVRLVVFFR    VRM IGVT KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSNCVRLVVFFR----VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
A0A5B6U445 Transcription factor bHLH1441.7e-1356.98Show/hide
Query:  MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        MPW+        NCVRLV + F              VRM+I VT KRYR  KEVGK+ MSVG+IAYY+++QVCQAEYFRQLLKPVT
Subjt:  MPWTSSLVNYSSNCVRLV-VFF-------------RVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
A0A7J6ENW5 Uncharacterized protein9.9e-1480Show/hide
Query:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        VRMFI ++ KRYR  KEVGK+ MSVG+IAYYQ+MQVCQAEYFRQLLKPVT
Subjt:  VRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G29951.1 conserved peptide upstream open reading frame 351.8e-0763.41Show/hide
Query:  KRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        K  R  KE+G   M+   IA YQ +QVCQAEYFRQLLKPVT
Subjt:  KRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT
AT5G50011.1 conserved peptide upstream open reading frame 371.1e-0468.97Show/hide
Query:  NMSVGIIAYYQVMQVCQAEYFRQLLKPVT
        N+ V +IA +Q +Q CQAEYFRQLLKPVT
Subjt:  NMSVGIIAYYQVMQVCQAEYFRQLLKPVT
AT5G64341.1 conserved peptide upstream open reading frame 406.4e-0559.09Show/hide
Query:  RYRGFK-EVGKVNMS---VGIIAYYQVMQVCQAEYFRQLLKPVT
        R+RG K E G  N S   V +I  YQ M  CQAEYFR LLKPVT
Subjt:  RYRGFK-EVGKVNMS---VGIIAYYQVMQVCQAEYFRQLLKPVT

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCGTGGACATCCTCCTTGGTGAATTATAGCAGCAACTGTGTTCGCTTGGTTGTCTTCTTTCGAGTGAGAATGTTCATTGGTGTAACTGGAAAGAGATACAGAGGATT
CAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTACTTTCGCCAATTGCTAAAACCTGTCACGTAG
mRNA sequenceShow/hide mRNA sequence
ATGCCGTGGACATCCTCCTTGGTGAATTATAGCAGCAACTGTGTTCGCTTGGTTGTCTTCTTTCGAGTGAGAATGTTCATTGGTGTAACTGGAAAGAGATACAGAGGATT
CAAGGAAGTTGGGAAAGTTAACATGAGTGTTGGAATCATTGCCTACTACCAAGTGATGCAAGTTTGTCAGGCCGAGTACTTTCGCCAATTGCTAAAACCTGTCACGTAG
Protein sequenceShow/hide protein sequence
MPWTSSLVNYSSNCVRLVVFFRVRMFIGVTGKRYRGFKEVGKVNMSVGIIAYYQVMQVCQAEYFRQLLKPVT