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Sed0010021 (gene) of Chayote v1 genome

Gene IDSed0010021
OrganismSechium edule (Chayote v1)
DescriptionGag/pol protein
Genome locationLG01:60637865..60640320
RNA-Seq ExpressionSed0010021
SyntenySed0010021
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032020.1 gag/pol protein [Cucumis melo var. makuwa]1.8e-1552.81Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A+NATR VRE  DHW  ANEK R YILAS+S +LAKK E M+T+ E+M +L ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

KAA0037371.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-1539.86Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALR--------------------------
        ECP   A NATR VREA + W  ANEK R YILAS+S++LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+                          
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALR--------------------------

Query:  -----VVIDKASQ----------------SMMKVKEKKVEANIVTKDK
              VID+ASQ                S+MK+K +K EAN+ T  +
Subjt:  -----VVIDKASQ----------------SMMKVKEKKVEANIVTKDK

KAA0051847.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-1551.69Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A NATR VREA + W  ANEK R YILAS+S +LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

KAA0054309.1 gag/pol protein [Cucumis melo var. makuwa]6.7e-1550.56Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A NATR VRE  + W   NEK R YILAS+S++LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+ +I+        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

KAA0063050.1 gag/pol protein [Cucumis melo var. makuwa]3.0e-1550Show/hide
Query:  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        MECP   A NAT+ VREA +HW   NEK R YILAS+S++LAKK E+M+T+ E+M +  ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

TrEMBL top hitse value%identityAlignment
A0A5A7SMN4 Gag/pol protein8.6e-1652.81Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A+NATR VRE  DHW  ANEK R YILAS+S +LAKK E M+T+ E+M +L ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

A0A5A7T706 Gag/pol protein1.5e-1539.86Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALR--------------------------
        ECP   A NATR VREA + W  ANEK R YILAS+S++LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+                          
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALR--------------------------

Query:  -----VVIDKASQ----------------SMMKVKEKKVEANIVTKDK
              VID+ASQ                S+MK+K +K EAN+ T  +
Subjt:  -----VVIDKASQ----------------SMMKVKEKKVEANIVTKDK

A0A5A7UBR0 Gag/pol protein3.3e-1551.69Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A NATR VREA + W  ANEK R YILAS+S +LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

A0A5A7ULH1 Gag/pol protein3.3e-1550.56Show/hide
Query:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        ECP   A NATR VRE  + W   NEK R YILAS+S++LAKK E+M+T+ E+M +L ++FGQ+S Q+KHDAL+ +I+        V+E
Subjt:  ECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

A0A5A7V728 Gag/pol protein1.5e-1550Show/hide
Query:  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE
        MECP   A NAT+ VREA +HW   NEK R YILAS+S++LAKK E+M+T+ E+M +  ++FGQ+S Q+KHDAL+ + +        V+E
Subjt:  MECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKE

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCATGCTCTTATTGGAATCAGAGCTTTGGCTCATATGGAATGTCCTCCTGCACTTGCACTTAATGCCACACGAAATGTTCGTGAGGCGCTTGATCATTGGAATAATGC
AAACGAAAAGGGAAGGGTCTACATCTTGGCAAGTGTCTCAGACATTCTAGCCAAGAAACTTGAGAACATGGTAACTTCTTTAGAGATGATGAGAACCCTTTATAAAATTT
TTGGGCAATCGTCGTCTCAAGTAAAGCATGATGCTCTCCGAGTTGTAATAGATAAAGCTAGTCAGTCCATGATGAAAGTCAAGGAAAAAAAGGTAGAGGCAAATATTGTC
ACCAAGGATAAGTGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAAGTCGGACCTTCTAG
mRNA sequenceShow/hide mRNA sequence
ATGCATGCTCTTATTGGAATCAGAGCTTTGGCTCATATGGAATGTCCTCCTGCACTTGCACTTAATGCCACACGAAATGTTCGTGAGGCGCTTGATCATTGGAATAATGC
AAACGAAAAGGGAAGGGTCTACATCTTGGCAAGTGTCTCAGACATTCTAGCCAAGAAACTTGAGAACATGGTAACTTCTTTAGAGATGATGAGAACCCTTTATAAAATTT
TTGGGCAATCGTCGTCTCAAGTAAAGCATGATGCTCTCCGAGTTGTAATAGATAAAGCTAGTCAGTCCATGATGAAAGTCAAGGAAAAAAAGGTAGAGGCAAATATTGTC
ACCAAGGATAAGTGTTCTGGAACCACGGGTTTAGGGACCAAGCCTAAAAGTCGGACCTTCTAG
Protein sequenceShow/hide protein sequence
MHALIGIRALAHMECPPALALNATRNVREALDHWNNANEKGRVYILASVSDILAKKLENMVTSLEMMRTLYKIFGQSSSQVKHDALRVVIDKASQSMMKVKEKKVEANIV
TKDKCSGTTGLGTKPKSRTF