CuGenDBv2

Gene ID	Sed0010043
Organism	Sechium edule (Chayote v1)
Description	DNA repair REX1-B protein
Genome location	LG07:37098373..37102302
RNA-Seq Expression	Sed0010043
Synteny	Sed0010043
Gene Ontology terms	NA
InterPro domains	IPR039491 - Required for excision 1-B domain-containing protein

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7012978.1 hypothetical protein SDJN02_25732 [Cucurbita argyrosperma subsp. argyrosperma]

7.1e-82

82.69

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Query:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL
        MEDF+ KLSL EQMEEDGR       SSNTLTLL+KF+EIQQ RAEAYA LKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE NF S  HDR+
Subjt:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL

Query:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY
        ELA+LLRS           TAQIQLLKKAGRPSERLVSH NCRFKTP+EHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQ+AVTTINEHMEEVRY
Subjt:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

XP_004135056.1 uncharacterized protein LOC101210078 [Cucumis sativus]

4.3e-79

81.28

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Query:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL
        MEDFE KLSL EQMEED + +SSNTL+LL++F+EIQQ RAEAY+ LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIE NF S  H+RLELAN 
Subjt:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL

Query:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL
        LRS           TAQIQLLKKAGRPSERLVSH NCRF  PREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTINEHMEEVRYEI AL
Subjt:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL

Query:  EDK
        EDK
Subjt:  EDK

XP_008446706.1 PREDICTED: uncharacterized protein LOC103489347 [Cucumis melo]

6.2e-78

80.3

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Query:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL
        MEDFE KLSL EQMEED   +SSNTL+LL++F+EIQQ RAEAY+ LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIE NF +  H+RLELANL
Subjt:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL

Query:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL
        LRS           TAQIQLLKKAGRPSERLVSH NCR   PREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTIN+HMEEVRYEI AL
Subjt:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL

Query:  EDK
        EDK
Subjt:  EDK

XP_022945518.1 uncharacterized protein C19orf60 homolog [Cucurbita moschata]

2.4e-82

83.17

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Query:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL
        MEDF+ KLSL EQMEEDGR       SSNTLTLL+KF+EIQQ RAEAYA LKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE NF S  HDR+
Subjt:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL

Query:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY
        ELA+LLRS           TAQIQLLKKAGRPSERLVSH NCRFKTPREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQ+AVTTINEHMEEVRY
Subjt:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

XP_023541138.1 uncharacterized protein C19orf60 homolog [Cucurbita pepo subsp. pepo]

1.9e-82

83.17

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Query:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL
        MEDF+ KLSL EQMEEDGR       SSNTLTLL+KF+EIQQ RAEAYA LKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE NF S  HDR+
Subjt:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL

Query:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY
        ELA+LLRS           TAQIQLLKKAGRPSERLVSH NCRFKTPREHEC+HVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTINEHMEEVRY
Subjt:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

TrEMBL top hits

e value

%identity

Alignment

A0A0A0KUN3 Uncharacterized protein

2.1e-79

81.28

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Query:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL
        MEDFE KLSL EQMEED + +SSNTL+LL++F+EIQQ RAEAY+ LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIE NF S  H+RLELAN 
Subjt:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL

Query:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL
        LRS           TAQIQLLKKAGRPSERLVSH NCRF  PREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTINEHMEEVRYEI AL
Subjt:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL

Query:  EDK
        EDK
Subjt:  EDK

A0A1S3BGI9 uncharacterized protein LOC103489347

3.0e-78

80.3

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Query:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL
        MEDFE KLSL EQMEED   +SSNTL+LL++F+EIQQ RAEAY+ LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIE NF +  H+RLELANL
Subjt:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL

Query:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL
        LRS           TAQIQLLKKAGRPSERLVSH NCR   PREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTIN+HMEEVRYEI AL
Subjt:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL

Query:  EDK
        EDK
Subjt:  EDK

A0A5D3CFT2 Uncharacterized protein

3.0e-78

80.3

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Query:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL
        MEDFE KLSL EQMEED   +SSNTL+LL++F+EIQQ RAEAY+ LKRGFDEYMTSGREISYQQLC EIT EFSNCSKQVIDIE NF +  H+RLELANL
Subjt:  MEDFE-KLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRLELANL

Query:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL
        LRS           TAQIQLLKKAGRPSERLVSH NCR   PREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQDAVTTIN+HMEEVRYEI AL
Subjt:  LRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAAL

Query:  EDK
        EDK
Subjt:  EDK

A0A6J1G147 uncharacterized protein C19orf60 homolog

1.2e-82

83.17

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Query:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL
        MEDF+ KLSL EQMEEDGR       SSNTLTLL+KF+EIQQ RAEAYA LKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE NF S  HDR+
Subjt:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL

Query:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY
        ELA+LLRS           TAQIQLLKKAGRPSERLVSH NCRFKTPREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQ+AVTTINEHMEEVRY
Subjt:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

A0A6J1HYI6 uncharacterized protein C19orf60 homolog

1.2e-82

83.17

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Query:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL
        MEDF+ KLSL EQMEEDGR       SSNTLTLL+KF+EIQQ RAEAYA LKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIE NF S  HDR+
Subjt:  MEDFE-KLSLGEQMEEDGRAE-----SSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWS--HDRL

Query:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY
        ELA+LLRS           TAQIQLLKKAGRPSERLVSH NCRFKTPREHECVHVHEITEASGTEEAEADA+YDNALKEA+KGVQ+AVTTINEHMEEVRY
Subjt:  ELANLLRS-----------TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRY

Query:  EIAALEDK
        EIAALEDK
Subjt:  EIAALEDK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G04910.1 unknown protein

2.7e-55

58.33

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Query:  LGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWSHD--RLELANLLRS------
        +G      G   +S TL LL+  +EIQQ RA+AYANLK GF EY+ SG E  YQ+LC EIT EFS CSKQV ++E  F + +  R +LA LL        
Subjt:  LGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWSHD--RLELANLLRS------

Query:  -----TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAALE
             T  IQ+LKKAGRPSER+++H NC+FK P +HECVH+HEITEA+GTEEAEADA++DNALKEA++GVQDAVT+INE++E++RYEI ALE
Subjt:  -----TAQIQLLKKAGRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAALE

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGAAGATTTTGAGAAGCTCTCTCTGGGCGAACAAATGGAGGAAGACGGAAGGGCCGAATCCTCCAACACTCTCACTTTGCTCCAAAAGTTTGTTGAAATCCAGCAGCT
TAGAGCCGAAGCTTATGCCAATCTTAAAAGGGGTTTCGATGAGTATATGACTTCAGGAAGGGAGATATCTTACCAACAGCTTTGCGGGGAGATCACTGCAGAGTTCAGTA
ATTGCTCAAAACAAGTCATTGACATTGAGTTGAATTTCTGGAGTCATGACAGGCTCGAGTTAGCCAACCTGCTCAGATCTACAGCTCAAATTCAGTTATTGAAGAAGGCC
GGTCGCCCATCAGAGCGCTTGGTAAGCCACGGGAATTGCAGGTTCAAGACACCTCGAGAACACGAGTGCGTGCATGTCCATGAGATAACCGAGGCTTCTGGTACTGAGGA
AGCAGAAGCGGATGCCGATTATGACAATGCTCTCAAGGAAGCAGTCAAAGGCGTGCAAGATGCTGTGACGACTATAAACGAGCACATGGAGGAAGTGAGATATGAGATTG
CAGCTCTTGAAGATAAGTAA

mRNA sequence

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Protein sequence

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MEDFEKLSLGEQMEEDGRAESSNTLTLLQKFVEIQQLRAEAYANLKRGFDEYMTSGREISYQQLCGEITAEFSNCSKQVIDIELNFWSHDRLELANLLRSTAQIQLLKKA
GRPSERLVSHGNCRFKTPREHECVHVHEITEASGTEEAEADADYDNALKEAVKGVQDAVTTINEHMEEVRYEIAALEDK

Sed0010043 (gene) of Chayote v1 genome