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Sed0010083 (gene) of Chayote v1 genome

Gene IDSed0010083
OrganismSechium edule (Chayote v1)
DescriptionPectin lyase-like superfamily protein
Genome locationLG06:3256563..3260796
RNA-Seq ExpressionSed0010083
SyntenySed0010083
Gene Ontology termsGO:0005975 - carbohydrate metabolic process (biological process)
GO:0004650 - polygalacturonase activity (molecular function)
InterPro domainsIPR000743 - Glycoside hydrolase, family 28
IPR011050 - Pectin lyase fold/virulence factor


Homology Show/hide homology
GenBank top hitse value%identityAlignment
No hits found
TrEMBL top hitse value%identityAlignment
No hits found
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G65570.1 Pectin lyase-like superfamily protein8.2e-0445.28Show/hide
Query:  DSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI
        +SPN DGIH Q S+++ + NA+IKT    I+   G  + +VDG  C   GHGI
Subjt:  DSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI

AT2G43870.1 Pectin lyase-like superfamily protein6.3e-0440.68Show/hide
Query:  KCIFLGDSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI
        K +  G+SPN DGIH Q SS+V+I N  I T    ++   G N   ++   C   GHGI
Subjt:  KCIFLGDSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI

AT3G59850.1 Pectin lyase-like superfamily protein8.2e-0444.44Show/hide
Query:  GDSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI
        G+SPN DGIH Q SS V+ILN+ I T    ++   G N   ++   C   GHGI
Subjt:  GDSPNIDGIHAQESSNVTILNANIKTA--TIASQSGQNHQLVDGKYCMRTGHGI

AT5G39910.1 Pectin lyase-like superfamily protein4.8e-0439.62Show/hide
Query:  GDSPNIDGIHAQESSNVTILNANIKTATIASQSGQNHQLVD-GKYCMRTGHGI
        GDSPN DGIH Q S NV + ++NI+T       G   + ++  +     GHGI
Subjt:  GDSPNIDGIHAQESSNVTILNANIKTATIASQSGQNHQLVD-GKYCMRTGHGI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGCCAATACACACCTCTTTCCATTGGAACTATGCAGGCTATTTCTAATGAGCACGACTTGGTTGTGGATTTGGGAGATCTTACTCCGATTGATTGGAACCATAATTC
TGAGATACTAGTTTCTAGTCCAGACCAATCTACTCCTACAACTCCAGATAGTCAATCTGGTTTTCGCGAAGCCACAGAGGAGATTATTGAAAATAGCCTGAGGGAATTGC
ATAACACAAATAGAGACGAGAGTAATGAGGACCAGCAACATAATAAATCTGGGTTTAGAAACCAATTGGAAGAATGGCTAGTCAAAAACAATTATGTTGTGATGTCAATT
GATGACCTTCTCCAAAGATCTAGCAGAAACATTCATCAGGTTGACCCTCTCATTCCGGGTAAATGTATCTTCCTCGGCGATAGTCCGAACATCGATGGCATCCACGCCCA
AGAATCATCCAACGTTACCATCCTCAACGCCAATATCAAGACCGCGACGATTGCGTCTCAATCGGGCCAGAACCACCAACTTGTGGATGGAAAGTATTGCATGCGGACTG
GTCATGGAATCAGGTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGCCAATACACACCTCTTTCCATTGGAACTATGCAGGCTATTTCTAATGAGCACGACTTGGTTGTGGATTTGGGAGATCTTACTCCGATTGATTGGAACCATAATTC
TGAGATACTAGTTTCTAGTCCAGACCAATCTACTCCTACAACTCCAGATAGTCAATCTGGTTTTCGCGAAGCCACAGAGGAGATTATTGAAAATAGCCTGAGGGAATTGC
ATAACACAAATAGAGACGAGAGTAATGAGGACCAGCAACATAATAAATCTGGGTTTAGAAACCAATTGGAAGAATGGCTAGTCAAAAACAATTATGTTGTGATGTCAATT
GATGACCTTCTCCAAAGATCTAGCAGAAACATTCATCAGGTTGACCCTCTCATTCCGGGTAAATGTATCTTCCTCGGCGATAGTCCGAACATCGATGGCATCCACGCCCA
AGAATCATCCAACGTTACCATCCTCAACGCCAATATCAAGACCGCGACGATTGCGTCTCAATCGGGCCAGAACCACCAACTTGTGGATGGAAAGTATTGCATGCGGACTG
GTCATGGAATCAGGTAA
Protein sequenceShow/hide protein sequence
MSQYTPLSIGTMQAISNEHDLVVDLGDLTPIDWNHNSEILVSSPDQSTPTTPDSQSGFREATEEIIENSLRELHNTNRDESNEDQQHNKSGFRNQLEEWLVKNNYVVMSI
DDLLQRSSRNIHQVDPLIPGKCIFLGDSPNIDGIHAQESSNVTILNANIKTATIASQSGQNHQLVDGKYCMRTGHGIR