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Sed0010086 (gene) of Chayote v1 genome

Gene IDSed0010086
OrganismSechium edule (Chayote v1)
Descriptionglycine-rich RNA-binding protein GRP1A-like
Genome locationLG07:37616618..37619076
RNA-Seq ExpressionSed0010086
SyntenySed0010086
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6601227.1 hypothetical protein SDJN03_06460, partial [Cucurbita argyrosperma subsp. sororia]6.3e-1553.38Show/hide
Query:  IFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA---
        +F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS+  G G   GGG  GGG R   GG         A GS QA   
Subjt:  IFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA---

Query:  -SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
          R+ NAG   ENN+ LL+A+VLA I HL++VF
Subjt:  -SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

XP_022945097.1 uncharacterized protein LOC111449437 isoform X1 [Cucurbita moschata]2.2e-1555.3Show/hide
Query:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA
        M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+    GGG  RGG  G GG  S + GG AV      GS QA
Subjt:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHL
             R  NAG   ENN+ LL+AA LA I HL
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHL

XP_022945098.1 uncharacterized protein LOC111449437 isoform X2 [Cucurbita moschata]6.3e-1555.12Show/hide
Query:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR--RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQAS
        M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+    GGG RGGGG      GGS     YV G A    +  
Subjt:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR--RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQAS

Query:  RSPNAGACQENNIVLLIAAVLAVITHL
        R  NAG   ENN+ LL+AA LA I HL
Subjt:  RSPNAGACQENNIVLLIAAVLAVITHL

XP_022957462.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita moschata]2.2e-1552.94Show/hide
Query:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA
        + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS+  G G   GGG  GGG R   GG         A GS QA
Subjt:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
             R+ NAG   ENN+ LL+A+VLA I HL++VF
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

XP_023517064.1 glycine-rich RNA-binding protein GRP1A-like [Cucurbita pepo subsp. pepo]2.2e-1552.94Show/hide
Query:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA
        + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS+  G G   GGG  GGG R   GG         A GS QA
Subjt:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
             R+ NAG   ENN+ LL+A+VLA I HL++VF
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

TrEMBL top hitse value%identityAlignment
A0A0A0KUR6 Uncharacterized protein4.0e-1553.38Show/hide
Query:  MRLIFILFCSTMANSSSL--QQIFP--TESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS---RRGGGGGRGG--------GGGRGGGSR-YVGGG--
        +RLIF+LFCST+A SS+   QQIFP  TESNY Q+T  +KHG+ GVT  I R+YS+S +TVS   RRG G G GG        GGG  GGSR   GGG  
Subjt:  MRLIFILFCSTMANSSSL--QQIFP--TESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVS---RRGGGGGRGG--------GGGRGGGSR-YVGGG--

Query:  -----AVGSGQA----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
             A GS QA     R+ NAG   ENN+ LL+AAVLA I HL  VF
Subjt:  -----AVGSGQA----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

A0A6J1FZV5 uncharacterized protein LOC111449437 isoform X23.0e-1555.12Show/hide
Query:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR--RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQAS
        M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+    GGG RGGGG      GGS     YV G A    +  
Subjt:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR--RGGGGGRGGGG---GRGGGSR----YVGGGAVGSGQAS

Query:  RSPNAGACQENNIVLLIAAVLAVITHL
        R  NAG   ENN+ LL+AA LA I HL
Subjt:  RSPNAGACQENNIVLLIAAVLAVITHL

A0A6J1G000 uncharacterized protein LOC111449437 isoform X11.0e-1555.3Show/hide
Query:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA
        M LIFILFCS MA  +SSLQ+I PTESN HQ+T  EKHG+DG T  IGR+ SA  +TVS+    GGG  RGG  G GG  S + GG AV      GS QA
Subjt:  MRLIFILFCSTMA-NSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSR---RGGGGGRGGGGGRGG-GSRYVGGGAV------GSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHL
             R  NAG   ENN+ LL+AA LA I HL
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHL

A0A6J1GZ71 glycine-rich RNA-binding protein GRP1A-like1.0e-1552.94Show/hide
Query:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA
        + L+F+LFCST+ A SS+L QQI PTESNYHQ+T  EKHG+DGVT  I   YSA  +TVS+  G G   GGG  GGG R   GG         A GS QA
Subjt:  MRLIFILFCSTM-ANSSSL-QQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
             R+ NAG   ENN+ LL+A+VLA I HL++VF
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

A0A6J1JB47 uncharacterized protein LOC1114851593.0e-1550.74Show/hide
Query:  MRLIFILFCSTM--ANSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA
        + L+F+LFCST+   +S+  QQI PTE NYHQ+T  EKHGQDGVT  I   YSA  +TVS+  G G   GGG  GGG R   GG         A GS QA
Subjt:  MRLIFILFCSTM--ANSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGG---------AVGSGQA

Query:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF
             R  NAG   ENN+ LL+A+VLA I HL++VF
Subjt:  ----SRSPNAGACQENNIVLLIAAVLAVITHLYIVF

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAGATTGATATTCATTCTGTTTTGTTCTACCATGGCCAATTCATCTTCTCTGCAACAAATTTTCCCAACAGAATCTAATTACCACCAGCAAACCAAGATAGAAAAACA
TGGTCAAGATGGGGTTACTTACTGGATTGGCAGAAAATACAGTGCAAGTTTAGTTACCGTTTCTCGTCGTGGAGGAGGTGGTGGTCGTGGAGGAGGCGGTGGTCGTGGTG
GAGGTAGCAGATATGTAGGAGGAGGAGCTGTTGGTTCGGGACAAGCAAGTCGATCGCCCAATGCAGGAGCTTGCCAAGAGAACAACATAGTGCTTTTGATAGCTGCAGTT
TTGGCTGTCATTACACATCTATACATAGTTTTCTAA
mRNA sequenceShow/hide mRNA sequence
ATGAGATTGATATTCATTCTGTTTTGTTCTACCATGGCCAATTCATCTTCTCTGCAACAAATTTTCCCAACAGAATCTAATTACCACCAGCAAACCAAGATAGAAAAACA
TGGTCAAGATGGGGTTACTTACTGGATTGGCAGAAAATACAGTGCAAGTTTAGTTACCGTTTCTCGTCGTGGAGGAGGTGGTGGTCGTGGAGGAGGCGGTGGTCGTGGTG
GAGGTAGCAGATATGTAGGAGGAGGAGCTGTTGGTTCGGGACAAGCAAGTCGATCGCCCAATGCAGGAGCTTGCCAAGAGAACAACATAGTGCTTTTGATAGCTGCAGTT
TTGGCTGTCATTACACATCTATACATAGTTTTCTAA
Protein sequenceShow/hide protein sequence
MRLIFILFCSTMANSSSLQQIFPTESNYHQQTKIEKHGQDGVTYWIGRKYSASLVTVSRRGGGGGRGGGGGRGGGSRYVGGGAVGSGQASRSPNAGACQENNIVLLIAAV
LAVITHLYIVF