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Sed0010100 (gene) of Chayote v1 genome

Gene IDSed0010100
OrganismSechium edule (Chayote v1)
Description39S ribosomal protein L47, mitochondrial
Genome locationLG08:839644..844168
RNA-Seq ExpressionSed0010100
SyntenySed0010100
Gene Ontology termsGO:0032543 - mitochondrial translation (biological process)
GO:0005762 - mitochondrial large ribosomal subunit (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR010729 - Ribosomal protein L47, mitochondrial
IPR036049 - Ribosomal protein L29/L35 superfamily
IPR038340 - MRP-L47 superfamily, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004138121.1 39S ribosomal protein L47, mitochondrial [Cucumis sativus]1.8e-6186.71Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNL+F
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIK VLTERAI++PDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

XP_008453113.1 PREDICTED: 39S ribosomal protein L47, mitochondrial [Cucumis melo]6.8e-6186.71Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERI KVRKSMCRIK VLTERAI++PDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

XP_023530690.1 39S ribosomal protein L47, mitochondrial-like [Cucurbita pepo subsp. pepo]3.1e-6186.71Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSE S+ TAAA + ART YNPLE FFE  +S EDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIKQVLTERAI++PDPRRSAEM+RMVNAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

XP_028117216.1 39S ribosomal protein L47, mitochondrial [Camellia sinensis]1.2e-6085.31Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MF+ R+FGRT  AAA+SE S+  AAAA+ ART YNPLE FFE D+SAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIK VLTERAIE+PDPRRSAEM+RMVNAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

XP_038879389.1 39S ribosomal protein L47, mitochondrial [Benincasa hispida]4.7e-6287.41Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSETSS T AAAA AR  YNPLE FFE D+S +DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIKQVLTERAI++PDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

TrEMBL top hitse value%identityAlignment
A0A0A0LS48 Uncharacterized protein8.7e-6286.71Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNL+F
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIK VLTERAI++PDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

A0A1S3BWK4 39S ribosomal protein L47, mitochondrial3.3e-6186.71Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRTFLAAARSETSS TAAAAA ART YNPLE FFE D+S +D KPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERI KVRKSMCRIK VLTERAI++PDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

A0A2I4FJ69 39S ribosomal protein L47, mitochondrial2.8e-6085.31Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRT  AAA+SETS+ TAAAA+AAR   NPLE FFE D+S +DDKPVVYGRSWKASELRLKSWDDL+KLWYVLLKEKNMLMTQR+MLHAQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPER+PKVRKSMCRIKQVLTERAIEDPDPRRSAEM+RM+NAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

A0A5N6RPC1 Uncharacterized protein1.3e-6086.01Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R+FGRT  AAA+SETS+ TAAAA+AAR   NPLE FFE D+S +DDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQR+MLHAQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEM+RM+N+L
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

A0A803QYM8 Uncharacterized protein2.8e-6084.62Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF
        MFL R FGRT LAAA+SET +  AAAA++ARTEYNPL  FFE D+S ED+KPVVYGRSWKASELRLKSWDDL KLWYVLLKEKNMLMTQR+ML+AQNLRF
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRF

Query:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        PNPER+PKVRKSMCRIKQVLTERAIE+PDPRRSAEM+RMVNAL
Subjt:  PNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL

SwissProt top hitse value%identityAlignment
P87232 54S ribosomal protein L4, mitochondrial5.7e-1043.75Show/hide
Query:  TEYNPLEAFFETDKSA--EDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFP--NPERIPKVRKSMCRIKQVLTER
        ++ +PL  FF  DK A     +   +GR+W A ELR KS++DL+ LWY  L+EKN+L TQR  +    L  P  + ER+  V K+M  IK VL ER
Subjt:  TEYNPLEAFFETDKSA--EDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFP--NPERIPKVRKSMCRIKQVLTER

Q08DT6 39S ribosomal protein L47, mitochondrial5.5e-1348.28Show/hide
Query:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER
        LE FF+  K+  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  +    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER

Q2H080 54S ribosomal protein L4, mitochondrial2.8e-0940.59Show/hide
Query:  FFETDKSAEDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNP---ERIPKVRKSMCRIKQVLTERAIEDPDPRRSA
        FF+      +  P +  +GRSW A ELR KSWDDL++LW+V  KE+N + T     +   L F      ER   VR++M  IK VLTER     D  + A
Subjt:  FFETDKSAEDDKPVV--YGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNP---ERIPKVRKSMCRIKQVLTERAIEDPDPRRSA

Query:  E
        E
Subjt:  E

Q8K2Y7 39S ribosomal protein L47, mitochondrial3.2e-1348.28Show/hide
Query:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER
        LE FF+  K+  ++K V  G SW   +LR KS +DL+KLWYVLLKE+NML+T  +    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER

Q9HD33 39S ribosomal protein L47, mitochondrial2.1e-1247.13Show/hide
Query:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER
        LE FF+  K+   +K V  G +W   +LR KS +DL+KLWYVLLKE+NML+T  +    Q L  P+PER+ KV  SM  + +V+ ER
Subjt:  LEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVRKSMCRIKQVLTER

Arabidopsis top hitse value%identityAlignment
AT1G07830.1 ribosomal protein L29 family protein2.1e-5576.39Show/hide
Query:  MFLRRLFGRTFLAAARSETSSGTAAAAAAA-RTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLR
        MFL R  GR FLAAA + + S TAAAAA+  RT  NPLE FFE D+S ++DKPVVYGR WKASELRLKSWDDL KLWYVLLKEKNMLMTQR+ML AQN++
Subjt:  MFLRRLFGRTFLAAARSETSSGTAAAAAAA-RTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLR

Query:  FPNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL
        FPNPERIPKVR+SMCRIK VLTERAIE+PD RRSAEM+RMVN +
Subjt:  FPNPERIPKVRKSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTTTCTGAGACGATTGTTTGGGAGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGGTACAGCTGCTGCTGCTGCTGCAGCTAGGACAGAGTACAATCCGCT
CGAGGCGTTTTTCGAGACAGATAAAAGTGCTGAGGATGACAAGCCTGTCGTATATGGTCGAAGTTGGAAGGCTTCAGAACTAAGGCTGAAGTCTTGGGACGATCTTAATA
AGCTATGGTATGTTCTTTTGAAGGAGAAAAACATGTTGATGACTCAGCGGGAGATGCTTCATGCACAAAATCTAAGGTTTCCGAATCCGGAACGCATTCCCAAGGTTAGG
AAGTCAATGTGCCGAATCAAGCAAGTGCTTACCGAGAGAGCCATCGAAGATCCAGATCCCCGTAGATCTGCAGAGATGAGGAGGATGGTAAATGCTTTGTGA
mRNA sequenceShow/hide mRNA sequence
ATTTGTGTAAAAAATTGTCGGTATTTTACGTATTGCCCTCAGTTCTCAGTTTCCTCGCACTTGGCCAGACTTGCGTCGCCACCACTTCCTCGTTGCCGCTCACTCGCCGG
AGCTCAGATCGCCGCCTCTTGCCGGAGAAACGCCTTGTCTGAGCCTCCGCAGTTCACCGACGATTCTTCAGAGTACAGTTCTTCGCACTGTAATACGATCACGACGTTCA
GAATCGGAGCATTGGTGCAGCCATGTTTCTGAGACGATTGTTTGGGAGGACATTTCTAGCTGCTGCTAGATCAGAAACTTCTTCTGGTACAGCTGCTGCTGCTGCTGCAG
CTAGGACAGAGTACAATCCGCTCGAGGCGTTTTTCGAGACAGATAAAAGTGCTGAGGATGACAAGCCTGTCGTATATGGTCGAAGTTGGAAGGCTTCAGAACTAAGGCTG
AAGTCTTGGGACGATCTTAATAAGCTATGGTATGTTCTTTTGAAGGAGAAAAACATGTTGATGACTCAGCGGGAGATGCTTCATGCACAAAATCTAAGGTTTCCGAATCC
GGAACGCATTCCCAAGGTTAGGAAGTCAATGTGCCGAATCAAGCAAGTGCTTACCGAGAGAGCCATCGAAGATCCAGATCCCCGTAGATCTGCAGAGATGAGGAGGATGG
TAAATGCTTTGTGATAAACTAGTTGGCGTTTCGAAGTCAGCCTCGTACGCAATGGAGTTTATTCTTCTGGATACGAAGGGAGAAAAAGTTAGTCTGATGGTGAATGACAA
TTATGCAAACGCCCTTTCAATGCAGTTCATTCTGTTCTTGAGGATCTTATTAGAAGCTAAGAAATTGTTTTATGATCTCTACTCTAGATTTATCAACAGTAATCAAAACT
TTTAGAGGTGTTTTTATTTGTGCCATCATTATCATGGCCAGAGTTTATTCTAGAAGATTTTCAATACAGAACATTTAGATCTGATGTGTGTGTGGAGCAGGTTGAAAATA
AAAGAGTTTGACAAAAAAGAAAATATTGATGCTTTGATGTGCTGTTAGGAAAATGAAAGTTTTGTCATGAATGTTAGGACCATAAAAGCACAAGGTAGAATGTGTGTTGA
TGGTTTGGCTTTGATGATCCTCTGCTTTGCTCATTCCAAGTCTATAATTTCTATTCCCTACACTAGAGGGGGCAAACCCAC
Protein sequenceShow/hide protein sequence
MFLRRLFGRTFLAAARSETSSGTAAAAAAARTEYNPLEAFFETDKSAEDDKPVVYGRSWKASELRLKSWDDLNKLWYVLLKEKNMLMTQREMLHAQNLRFPNPERIPKVR
KSMCRIKQVLTERAIEDPDPRRSAEMRRMVNAL