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Sed0010111 (gene) of Chayote v1 genome

Gene IDSed0010111
OrganismSechium edule (Chayote v1)
DescriptionGlycine-rich RNA-binding protein, putative
Genome locationLG08:35168421..35171434
RNA-Seq ExpressionSed0010111
SyntenySed0010111
Gene Ontology termsGO:0003723 - RNA binding (molecular function)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6572904.1 Glycine-rich RNA-binding protein 5, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.2e-4981.89Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASR+ S  QPSQLSIFQ  RFMSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

KAG6584410.1 Glycine-rich RNA-binding protein 3, mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]3.3e-4678.91Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSAS I S+ QPS+LSIFQ+ R MSS++VFVGGLSYGTDDQSL EAF+KYGEV+EA+VI DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGGW
        LDGQDLHGR IRVN A E+ RG  GGG+
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGGW

XP_022954706.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita moschata]2.5e-4982.68Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASRI S  QPSQLSIFQ  RFMSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

XP_022994220.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita maxima]1.2e-4881.89Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASRI S  QPSQLSIFQ  R MSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

XP_023541373.1 glycine-rich RNA-binding protein 4, mitochondrial-like [Cucurbita pepo subsp. pepo]2.5e-4982.68Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASRI S  QPSQLSIFQ  RFMSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

TrEMBL top hitse value%identityAlignment
A0A6J1ECL7 glycine-rich RNA-binding protein 3, mitochondrial-like4.7e-4678.12Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FS+SSAS I S+ QPS+LSIFQ+ R MSS++VFVGGLSYGTDDQSL EAF+KYGEV+EA+VI DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGGW
        LDGQDLHGR IRVN A E+ RG  GGG+
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGGW

A0A6J1GRM7 glycine-rich RNA-binding protein 4, mitochondrial-like1.2e-4982.68Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASRI S  QPSQLSIFQ  RFMSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

A0A6J1I6W1 glycine-rich RNA-binding protein 3, mitochondrial1.4e-4578.12Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GKVF +SSAS I S+ QPS+LSIFQ+ R MSS++VFVGGLSYGTDDQSL EAF+KYGEV+EA+VI DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPR-GNYGGG
        LDGQDLHGR IRVN A E+ R G Y GG
Subjt:  LDGQDLHGRRIRVNLANEKPR-GNYGGG

A0A6J1K0M4 glycine-rich RNA-binding protein 4, mitochondrial-like5.9e-4981.89Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+GK+FSQSSASRI S  QPSQLSIFQ  R MSS++VFVGGLSYGTDD SL EAF KYGEV+EA+VILDRDTGRSRGFGFVTF GNEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        LDGQDLHGRRIRVN A E+ RG++ GG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

A0A6J1KFU7 glycine-rich RNA-binding protein 3, mitochondrial-like2.3e-4576.74Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFL K+GK+FS+SSAS I S+ QPS+LSIFQ+ R MSS++VFVGGLSYGTDDQSL EAF+KYGEV+EA+VI DRDTGRSRGFGFVTF  NEEASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPR--GNYGGG
        LDGQDLHGR IRVN A E+ R  G Y GG
Subjt:  LDGQDLHGRRIRVNLANEKPR--GNYGGG

SwissProt top hitse value%identityAlignment
Q43472 Glycine-rich RNA-binding protein blt8019.2e-2361.63Show/hide
Query:  FVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQALDGQDLHGRRIRVNLANEKPRGNYGGGW
        FVGGL + TDDQSL  AF+KYG+VI++K+I DR+TGRSRGFGFVTFA +E    AI+A++GQDL GR I VN A  + R + GGG+
Subjt:  FVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQALDGQDLHGRRIRVNLANEKPRGNYGGGW

Q9C909 Glycine-rich RNA-binding protein 5, mitochondrial2.0e-3359.38Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+G++FSQ+S+   +S+      S+ Q+ R MSS+++FVGG+SY TD+  L EAF+KYGEV++AK+I+DR+TGRSRGF FVTF   EEAS+A+Q 
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGGW
        LDGQDLHGRRIRVN A E+  G  G G+
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGGW

Q9FNR1 Glycine-rich RNA-binding protein 3, mitochondrial1.4e-3456.25Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK G +  Q++  ++++    S  S+FQ  R MSS+++F+GG++Y  D+ SL EAF KYGEV++ +VILDR+TGRSRGFGFVTF  +E ASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPR-GNYGGG
        LDG+DLHGR ++VN AN++   G +GGG
Subjt:  LDGQDLHGRRIRVNLANEKPR-GNYGGG

Q9LIS2 Glycine-rich RNA-binding protein 4, mitochondrial3.0e-2650Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAF +K+  +  Q     +S +      S+  + R+MSS ++FVGGLS+GTDD SL +AF  +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEK---PRGNYGGG
        +DG++L+GR+IRVNLA E+   PR ++GGG
Subjt:  LDGQDLHGRRIRVNLANEK---PRGNYGGG

Q9SVM8 Glycine-rich RNA-binding protein 2, mitochondrial2.6e-2550.39Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAF +K+G +  Q+    ISSN      S+  + R MS+ ++F+GGLS+GTDD SL +AF  +G+V++AKVI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRG--NYGGG
        +DG++L+GR IRVN AN++P     YGGG
Subjt:  LDGQDLHGRRIRVNLANEKPRG--NYGGG

Arabidopsis top hitse value%identityAlignment
AT1G74230.1 glycine-rich RNA-binding protein 51.4e-3459.38Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK+G++FSQ+S+   +S+      S+ Q+ R MSS+++FVGG+SY TD+  L EAF+KYGEV++AK+I+DR+TGRSRGF FVTF   EEAS+A+Q 
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGGW
        LDGQDLHGRRIRVN A E+  G  G G+
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGGW

AT3G23830.1 glycine-rich RNA-binding protein 42.2e-2750Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAF +K+  +  Q     +S +      S+  + R+MSS ++FVGGLS+GTDD SL +AF  +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEK---PRGNYGGG
        +DG++L+GR+IRVNLA E+   PR ++GGG
Subjt:  LDGQDLHGRRIRVNLANEK---PRGNYGGG

AT3G23830.2 glycine-rich RNA-binding protein 42.2e-2750Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAF +K+  +  Q     +S +      S+  + R+MSS ++FVGGLS+GTDD SL +AF  +GEV EA VI DR+TGRSRGFGFV+F+  + A++AI+ 
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEK---PRGNYGGG
        +DG++L+GR+IRVNLA E+   PR ++GGG
Subjt:  LDGQDLHGRRIRVNLANEK---PRGNYGGG

AT4G13850.4 glycine-rich RNA-binding protein 26.7e-2951.97Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAF +K+G +  Q+    ISSN      S+  + R MS+ ++F+GGLS+GTDD SL +AF  +G+V++AKVI+DR+TGRSRGFGFV F     A++AI  
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPRGNYGGG
        +DG++L+GR IRVN AN++P G YGGG
Subjt:  LDGQDLHGRRIRVNLANEKPRGNYGGG

AT5G61030.1 glycine-rich RNA-binding protein 39.7e-3656.25Show/hide
Query:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA
        MAFLSK G +  Q++  ++++    S  S+FQ  R MSS+++F+GG++Y  D+ SL EAF KYGEV++ +VILDR+TGRSRGFGFVTF  +E ASSAIQA
Subjt:  MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQA

Query:  LDGQDLHGRRIRVNLANEKPR-GNYGGG
        LDG+DLHGR ++VN AN++   G +GGG
Subjt:  LDGQDLHGRRIRVNLANEKPR-GNYGGG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTTCTCAGTAAAATTGGAAAAGTATTTAGCCAGAGTTCTGCATCAAGGATCAGTTCAAATTTTCAACCTTCCCAGCTGTCTATCTTTCAAACTAATAGATTCAT
GTCAAGCGCGCAAGTTTTTGTTGGAGGCCTTTCGTATGGCACTGATGACCAGAGTCTGATGGAAGCCTTCAACAAGTATGGGGAAGTAATTGAAGCGAAAGTCATATTGG
ATCGTGACACTGGTAGATCCAGAGGTTTTGGATTTGTCACTTTTGCTGGCAATGAAGAAGCTTCGAGTGCTATTCAAGCGTTGGATGGACAGGATCTCCACGGCCGTCGC
ATTAGGGTAAACTTGGCAAATGAAAAGCCTCGTGGTAACTATGGAGGTGGTTGGAGGGATATATAA
mRNA sequenceShow/hide mRNA sequence
AAAACCCTGCTTGAATCAAAGGTTAGGGTTTAAGGTCGACCGCAAAAGAAAGAAAGAAAGCTTGAAAAGTTTCCTTGCAGGTTGTCAACATGGCTTTTCTCAGTAAAATT
GGAAAAGTATTTAGCCAGAGTTCTGCATCAAGGATCAGTTCAAATTTTCAACCTTCCCAGCTGTCTATCTTTCAAACTAATAGATTCATGTCAAGCGCGCAAGTTTTTGT
TGGAGGCCTTTCGTATGGCACTGATGACCAGAGTCTGATGGAAGCCTTCAACAAGTATGGGGAAGTAATTGAAGCGAAAGTCATATTGGATCGTGACACTGGTAGATCCA
GAGGTTTTGGATTTGTCACTTTTGCTGGCAATGAAGAAGCTTCGAGTGCTATTCAAGCGTTGGATGGACAGGATCTCCACGGCCGTCGCATTAGGGTAAACTTGGCAAAT
GAAAAGCCTCGTGGTAACTATGGAGGTGGTTGGAGGGATATATAATCGCCAATGTCGAAAGGGCTCGAGGGAACTGCTAGCTCTGCCTGAAAACATAATATTTTTAGTAT
TCATCTTTTTTGCTATTGGGAAAGAGATTGAATGATTTTAAGTAAATGGTTTTGATATGGATTATATTTTTCGAATCGTTCATAATCTTAGTGCTTATGATCTATTTATT
ACTCACTTTATTGTTCACTATGTGATTCATAAGTAGAAGTAGAACTGAAGTGAGCATGAGGATTTATGATTTTGTTTTGATCAATAATTGCAAGCAGAAGATGGAAAGAA
G
Protein sequenceShow/hide protein sequence
MAFLSKIGKVFSQSSASRISSNFQPSQLSIFQTNRFMSSAQVFVGGLSYGTDDQSLMEAFNKYGEVIEAKVILDRDTGRSRGFGFVTFAGNEEASSAIQALDGQDLHGRR
IRVNLANEKPRGNYGGGWRDI