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Sed0010162 (gene) of Chayote v1 genome

Gene IDSed0010162
OrganismSechium edule (Chayote v1)
DescriptionTranscription factor UPBEAT1
Genome locationLG07:4388246..4388759
RNA-Seq ExpressionSed0010162
SyntenySed0010162
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044660 - Transcription factor IBH1-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0046707.1 transcription factor UPBEAT1 [Cucumis melo var. makuwa]1.6e-2352.94Show/hide
Query:  MGVLPETLLLAQLNMKE--TTQQSIL-------NSQNESNIWKQTS----IMEEEDQEAIHKAKAKSTSNKIR---------RSNNSLMKKRRSRSS---
        MGV  ETLL  QLNM++  TTQ  I+       +S N+ +IWK+ S    + EEEDQE   K K KST N I          RSN+ ++KKR  RSS   
Subjt:  MGVLPETLLLAQLNMKE--TTQQSIL-------NSQNESNIWKQTS----IMEEEDQEAIHKAKAKSTSNKIR---------RSNNSLMKKRRSRSS---

Query:  ---ARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS
           +RIEQRV+ LR LVPN D +  ++++ C+ GS+EQLFTQTADYILSLQT VRLMKTLVDVLS  SSS
Subjt:  ---ARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS

KAG6575752.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]1.1e-2156.03Show/hide
Query:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN
        MG  P TLLL QLNM+E TQ  I+N     +I K++S+ EE+        K   +  + RR++ SL KK R RSS RI QRV+TLR LVPN + D  N+N
Subjt:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN

Query:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSS
        +D   GS+EQLFT TADYILSLQT VR M+TLVDVLSGSSS
Subjt:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSS

KAG6593250.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. sororia]8.0e-2862Show/hide
Query:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN
        MGV PETLLL QLNMKE        SQ+E+++ +Q    E+++Q+   +A AKS  N+ RRS+NSLMKKRRSRSS RIEQRVSTLR LVPN   +  NNN
Subjt:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN

Query:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSSSSSSNDHE
         +  VGS+EQLFTQTADYILSLQT VR MK LVDVL      S+SSNDHE
Subjt:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSSSSSSNDHE

KAG7025601.1 Transcription factor UPBEAT1, partial [Cucurbita argyrosperma subsp. argyrosperma]1.0e-2762Show/hide
Query:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN
        MGV PETLLL QLNMKE        SQ+E+++ +Q    ++E QEAI K     + N+ RRS+NSLMKKRRSRSS RIEQRVSTLR LVPN   +  NNN
Subjt:  MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNN

Query:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSSSSSSNDHE
         +  VGS+EQLFTQTADYILSLQT VR MK LVDVL      S+SSNDHE
Subjt:  DDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSSSSSSNDHE

XP_031744332.1 transcription factor UPBEAT1 [Cucumis sativus]3.1e-2454.88Show/hide
Query:  MGVLPETLLLAQLNMK--ETTQQSIL-------NSQNESNIWKQTSIMEEEDQEAIHKAK-AKSTSN-------KIRRSNNSLMKKRRSR-----SSARI
        MGV  ETLL  QLNM+  +TTQ  I+       N+ N+ + WK+ S+ EEE QE   K K  KST N       + R  +NSL+ K+RSR     SS+RI
Subjt:  MGVLPETLLLAQLNMK--ETTQQSIL-------NSQNESNIWKQTSIMEEEDQEAIHKAK-AKSTSN-------KIRRSNNSLMKKRRSR-----SSARI

Query:  EQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS
        EQRV+TLR LVPN D    ++ D+  VGS+EQLFTQTADYILSLQT VRLMKTLVDVLS  SSS
Subjt:  EQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS

TrEMBL top hitse value%identityAlignment
A0A0A0K6D9 Uncharacterized protein1.5e-2454.88Show/hide
Query:  MGVLPETLLLAQLNMK--ETTQQSIL-------NSQNESNIWKQTSIMEEEDQEAIHKAK-AKSTSN-------KIRRSNNSLMKKRRSR-----SSARI
        MGV  ETLL  QLNM+  +TTQ  I+       N+ N+ + WK+ S+ EEE QE   K K  KST N       + R  +NSL+ K+RSR     SS+RI
Subjt:  MGVLPETLLLAQLNMK--ETTQQSIL-------NSQNESNIWKQTSIMEEEDQEAIHKAK-AKSTSN-------KIRRSNNSLMKKRRSR-----SSARI

Query:  EQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS
        EQRV+TLR LVPN D    ++ D+  VGS+EQLFTQTADYILSLQT VRLMKTLVDVLS  SSS
Subjt:  EQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS

A0A445F6P8 Transcription factor UPBEAT12.3e-0436.55Show/hide
Query:  MGVLPETLLLAQLNMKETTQQSILNSQNESN--IWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSA----RIEQRVSTLRYLVPNTDY
        MG+  +T L++  ++K+  Q +  N  + S   +W +    + +        K K T   +RR    LM  RRS S       I +RV TL+ LVPN+D 
Subjt:  MGVLPETLLLAQLNMKETTQQSILNSQNESN--IWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSA----RIEQRVSTLRYLVPNTDY

Query:  DGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS
                 S+G ++ LF QTADYILSLQT VR+M+ +V VL+GS
Subjt:  DGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS

A0A5A7TXU1 Transcription factor UPBEAT17.6e-2452.94Show/hide
Query:  MGVLPETLLLAQLNMKE--TTQQSIL-------NSQNESNIWKQTS----IMEEEDQEAIHKAKAKSTSNKIR---------RSNNSLMKKRRSRSS---
        MGV  ETLL  QLNM++  TTQ  I+       +S N+ +IWK+ S    + EEEDQE   K K KST N I          RSN+ ++KKR  RSS   
Subjt:  MGVLPETLLLAQLNMKE--TTQQSIL-------NSQNESNIWKQTS----IMEEEDQEAIHKAKAKSTSNKIR---------RSNNSLMKKRRSRSS---

Query:  ---ARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS
           +RIEQRV+ LR LVPN D +  ++++ C+ GS+EQLFTQTADYILSLQT VRLMKTLVDVLS  SSS
Subjt:  ---ARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGSSSS

I1LD82 BHLH transcription factor3.9e-0442.86Show/hide
Query:  AIHKAKAKSTSNKIRRSNNSLMKKRRS----RSSARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS
        A    K K T   +RR    LM KRRS     S+  I +RV  L+ LVPN+D              ++ LF  TADYILSLQT VR+M+ +V VL+GS
Subjt:  AIHKAKAKSTSNKIRRSNNSLMKKRRS----RSSARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS

I1NHA0 BHLH transcription factor2.7e-0547.31Show/hide
Query:  KAKSTSNKIRRSNNSLMKKRRSRSSA----RIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS
        K K T   +RR    LM  RRS S       I +RV TL+ LVPN+D          S+G ++ LF QTADYILSLQT VR+M+ +V VL+GS
Subjt:  KAKSTSNKIRRSNNSLMKKRRSRSSA----RIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLSGS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G47270.1 sequence-specific DNA binding transcription factors;transcription regulators7.8e-0538.64Show/hide
Query:  RRSNNSLMKK-----RRSRSSAR-----IEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLS
        +R+  +L+KK     R+S  ++R     I +RV TL+ LVPNT    G          ++ LF QTADYIL+L+  V++M+T+V VL+
Subjt:  RRSNNSLMKK-----RRSRSSAR-----IEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQLFTQTADYILSLQTTVRLMKTLVDVLS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTTTACCAGAAACCCTTTTGCTAGCCCAACTCAACATGAAAGAAACAACCCAACAATCCATCCTCAACTCACAAAATGAATCCAATATATGGAAACAAACATC
AATTATGGAAGAAGAAGATCAAGAAGCCATTCACAAAGCCAAAGCCAAATCTACTTCCAACAAAATTAGAAGAAGCAACAACTCATTGATGAAGAAGAGAAGGTCAAGAT
CATCCGCTCGAATCGAGCAAAGGGTCAGCACATTGAGATACCTCGTACCGAACACGGACTATGATGGCGGCAACAACAACGACGACTGCTCGGTCGGATCAATCGAACAG
CTTTTCACTCAAACAGCGGATTACATATTGTCGTTGCAAACAACAGTGAGATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTTCTTCCTCTTCTTCTTCTTCTTCTAA
TGATCATGAGTGA
mRNA sequenceShow/hide mRNA sequence
CTCAAATAATTCTCAAACTCTTACCTTTCTCTCCACAAAGAGAAAACAAAACAAAAAACTATGGGAGTTTTACCAGAAACCCTTTTGCTAGCCCAACTCAACATGAAAGA
AACAACCCAACAATCCATCCTCAACTCACAAAATGAATCCAATATATGGAAACAAACATCAATTATGGAAGAAGAAGATCAAGAAGCCATTCACAAAGCCAAAGCCAAAT
CTACTTCCAACAAAATTAGAAGAAGCAACAACTCATTGATGAAGAAGAGAAGGTCAAGATCATCCGCTCGAATCGAGCAAAGGGTCAGCACATTGAGATACCTCGTACCG
AACACGGACTATGATGGCGGCAACAACAACGACGACTGCTCGGTCGGATCAATCGAACAGCTTTTCACTCAAACAGCGGATTACATATTGTCGTTGCAAACAACAGTGAG
ATTGATGAAGACTTTGGTTGATGTCTTGTCTGGTTCTTCCTCTTCTTCTTCTTCTTCTAATGATCATGAGTGAG
Protein sequenceShow/hide protein sequence
MGVLPETLLLAQLNMKETTQQSILNSQNESNIWKQTSIMEEEDQEAIHKAKAKSTSNKIRRSNNSLMKKRRSRSSARIEQRVSTLRYLVPNTDYDGGNNNDDCSVGSIEQ
LFTQTADYILSLQTTVRLMKTLVDVLSGSSSSSSSSNDHE