CuGenDBv2

Gene ID	Sed0010163
Organism	Sechium edule (Chayote v1)
Description	60S ribosomal export protein NMD3
Genome location	LG14:20538112..20539633
RNA-Seq Expression	Sed0010163
Synteny	Sed0010163
Gene Ontology terms	GO:0000055 - ribosomal large subunit export from nucleus (biological process) GO:0015031 - protein transport (biological process) GO:0005634 - nucleus (cellular component) GO:0005737 - cytoplasm (cellular component) GO:0043023 - ribosomal large subunit binding (molecular function)
InterPro domains	IPR007064 - Nmd3, N-terminal IPR039768 - Ribosomal export protein Nmd3

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6586102.1 60S ribosomal export protein NMD3, partial [Cucurbita argyrosperma subsp. sororia]

9.7e-208

76.92

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQLESKELLTFCIKRLKNLNKVKL+HAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---
        IKVKLKVQKEVLHGAILEQSYV EYVVQD LC SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKH AA NA+RIKQMDQG          G   
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV++SPICREDLICLPPKVA S GN+GPLVICTKVTN++ L+DP TLRHC LDA+QYWRTSFK LL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEYIV+DIEN+STEVNV GSKYILAD Q+ARVSDFGRNDTIF+ RTHLG IL PGD  LGYD+Y ANSNDMEL+KYKGLQ+PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG
        +R  GKPRSWKLKSLEM+VD+KD  RAEQDK +SEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD++    D G
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG

XP_022978473.1 60S ribosomal export protein NMD3-like [Cucurbita maxima]

3.3e-208

77.11

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG
        IKVKLKVQKEVLHGAILEQSYVAEYVVQD LC SC+R  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA NA+RIKQMD+G              
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLR+C LDADQYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVARVSDFGRNDTIFS RTHLG IL PGD  LGYD+Y ANSNDME++KYKGL++PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM
        +R  GKPR+WKLKSLEMDVD  D  RAE+DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++   D GD+ M
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM

XP_023544705.1 60S ribosomal export protein NMD3-like [Cucurbita pepo subsp. pepo]

1.3e-207

76.66

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG
        IKVKLKVQKEVLHGAILEQSYVAEYVVQD LC SC+R  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA +A+RIKQMD+G              
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLR+C LDADQYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVARVSDFGRNDTIFS RTHLG IL PGD  LGYD+Y ANSNDME++KYKGL++PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDND
        +R  GKPR+WKLKSLEMDVD  D  RA++DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++   D   ND
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDND

XP_038883907.1 60S ribosomal export protein NMD3 isoform X1 [Benincasa hispida]

1.3e-207

76.91

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---
        IKVKLKVQKEVLHGAILEQSYV EYVVQD LC SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA +A+RIKQMDQG          G   
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLRHC LDA+QYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVAR+SDFGRNDTIFS +THLG IL PGD  LGYD+YGANSNDMEL+KYKGL++P+AILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM
         R  GKPR+WKLKSLEMDVD+K   +AE+DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++     GDNDM
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM

XP_038883908.1 60S ribosomal export protein NMD3 isoform X2 [Benincasa hispida]

1.3e-207

76.91

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---
        IKVKLKVQKEVLHGAILEQSYV EYVVQD LC SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA +A+RIKQMDQG          G   
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLRHC LDA+QYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVAR+SDFGRNDTIFS +THLG IL PGD  LGYD+YGANSNDMEL+KYKGL++P+AILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM
         R  GKPR+WKLKSLEMDVD+K   +AE+DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++     GDNDM
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM

TrEMBL top hits

e value

%identity

Alignment

A0A6J1D613 60S ribosomal export protein NMD3

2.3e-207

76.26

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KL
        IKVKLKVQKEVL+GAILEQSYVAEYVVQD +C SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA +A+RIKQMDQG            K 
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KL

Query:  LQ--SGVATINDLFHIML-----RVTLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        ++    VA I       L     +  +      FSV+I PICREDLICLPPKVA S GNLGPLVICTKVTN+I L+DPFTLRHC LDADQYWRTSF+SLL
Subjt:  LQ--SGVATINDLFHIML-----RVTLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEYI++DIEN+S EVNV GSKY+LAD QVARVSDFGRNDTIFS RTHLG IL PGD  LGYD+Y ANSNDMELDKYKGL +PEAIL+KKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDND
        +R  GKPR+WKLKSL+MDVD+K   R +QDK NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD++++  D G N+
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDND

A0A6J1FIM4 60S ribosomal export protein NMD3

1.8e-207

76.52

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQLESK+LLTFCIKRLKNLNKVKL+HAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---
        IKVKLKVQKEVLHGA+LEQSYV EYVVQD LC SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKH AA NA+RIKQMDQG          G   
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV++SPICREDLICLPPKVA S GN+GPLVICTKVTN++ L+DP TLRHC LDA+QYWRTSFK LL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEYIV+DIEN+STEVNV GSKYILAD Q+ARVSDFGRNDTIF+ RTHLG IL PGD  LGYD+Y ANSNDMEL+KYKGLQ+PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG
        +R  GKPRSWKLKSLEMDVD+KD  RAEQDK + EYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++   D G
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG

A0A6J1GFH4 60S ribosomal export protein NMD3

1.4e-207

76.71

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG
        IKVKLKVQKEVLHGAILEQSYVAEYVVQD LC SC+R  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA +A+RIKQMD+G              
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLR+C LDADQYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVARVSDFGRNDTIFS RTHLG IL PGD  LGYD+Y ANSNDME++KYKGL++PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM
        +R  GKPR+WKLKSLEMDVD  D  RA++DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++   D GD+ M
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM

A0A6J1HNX8 60S ribosomal export protein NMD3

2.3e-207

76.52

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTW+KAQ+ESKELLTFCIKRLKNLNKVKL+HAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---
        IKVKLKVQKEVLHGAILEQSYV EYVVQD LC SCSR  AN DQWVASVQLRQHVPHRRTF FLEQLILKH AA NA+RIKQMDQG          G   
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG-----KLLQSG---

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV++SPICREDLICLPPKVA S GN+GPLVICTKVTN+++L+DP TLRHC LDA+QYWRTSFK LL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEYIV+DIEN+STEVNV GSKYILAD Q+ARVSDFGRNDTIF+ RTHLG IL PGD  LGYD+Y ANSNDMEL+KYKGLQ+PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG
        +R  GKPRSWKLKSL MDVD+KD  RAEQDK +SEYEQFLRDLEENP++RFNISLYR+ EYQ SE TD ED P VP+EELLA LD+++   D G
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYG

A0A6J1IT79 60S ribosomal export protein NMD3

1.6e-208

77.11

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCGIPM PNAANMCVKCLCSEVDITEGLQKQLTI  CP C SYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG
        IKVKLKVQKEVLHGAILEQSYVAEYVVQD LC SC+R  AN DQWVASVQLRQHVPHRRTF FLEQLILKHGAA NA+RIKQMD+G              
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSG

Query:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
        V  I  +  I  R    ++S             FSV+ISPICREDLICLPPKVA S GNLGPLVICTKVTNAI L+DPFTLR+C LDADQYWRTSF+SLL
Subjt:  VATINDLFHIMLRVTLTIMSTQ-----------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
        TSRQLVEY+V+DIEN+STEVNV GSKY+LA  QVARVSDFGRNDTIFS RTHLG IL PGD  LGYD+Y ANSNDME++KYKGL++PEAILIKKSYEEKR
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM
        +R  GKPR+WKLKSLEMDVD  D  RAE+DK+NSEYEQFLRDLEENP++RFNISLYRN EYQ SE TD ED P VP+EELLA LD+++   D GD+ M
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDM

SwissProt top hits

e value

%identity

Alignment

Q08DS5 60S ribosomal export protein NMD3

1.8e-100

41.84

Show/hide

Query:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL
        +LCC CG+P+ PN AN+CV CL S+VDI++G+ KQ++I+FC  C  Y QPP TW++  LES++LL  C+K++K  L+KV+LV A FVWTEPHSKR+KVKL
Subjt:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL

Query:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KLLQSGV
         +QKEV++GAIL+Q +V +YVVQ Q+C  C R  A  D W A VQ+RQ   H++TF +LEQLILK+G   N +RIK++  G            K+++   
Subjt:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KLLQSGV

Query:  ATINDLFHIMLRV--------TLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQ
         T+   +    R+        T    ST FSV+I PIC+++++CL PK+A S GN+  + +C +VT+ I L+DP TL+   +D + +W   F SL   +Q
Subjt:  ATINDLFHIMLRV--------TLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQ

Query:  LVEYIVID---IENI--STEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEK
        L E+IV++   +++I  S    +   K+ L +V V + S+    D  +  RTHLG +L PGD VLG+D+   N ND  ++K K  ++P+ +LIKKSY+  
Subjt:  LVEYIVID---IENI--STEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEK

Query:  RRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE
        RR+   + R+WKLK L  D +  D      D+R  +Y+ FL DLEE+  +R N+++YR+        TD E  P + + E+L  L I+++
Subjt:  RRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE

Q6GNS3 60S ribosomal export protein NMD3

2.5e-105

42.2

Show/hide

Query:  MSGEQQQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWT
        M G       ++LCC+CGIP+ PN ANMCV CL ++VDI+EG+ KQ+++ FC  C  YLQPP TW++  LES+ELLT C+K+LK NL+KV+L+ A F+WT
Subjt:  MSGEQQQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWT

Query:  EPHSKRIKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------
        EPHSKR+KVKL +QKEV++GAIL+Q +V +YVVQ Q+C  C R  A  D W A VQ+RQ V H++TF +LEQ ILKH    N +R+K++  G        
Subjt:  EPHSKRIKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------

Query:  ----KLLQSGVATINDLFHIMLRVTLTIMSTQ-------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRT
            K+++    T+   F    R+    + T        FSV+I P+C+++L+CL PK+A S GN+  + IC +VT+ I L+DP TL+   +D + YWR 
Subjt:  ----KLLQSGVATINDLFHIMLRVTLTIMSTQ-------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRT

Query:  SFKSLLTSRQLVEYIVIDIENISTEVNVCG-----SKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEA
         F SL   +Q+ E+IV+D E I       G     +K++LA+V V + S+       +  RTHLG +L PGD VLG+D+   N ND  ++K     IP+ 
Subjt:  SFKSLLTSRQLVEYIVIDIENISTEVNVCG-----SKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEA

Query:  ILIKKSYEEKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE
        +LIKKSY+  RR+   + R+WKLK ++ D +  D      D+R  +Y+ FL DLEE+  +R N+++++N        TD E  P + + E+L  L I+++
Subjt:  ILIKKSYEEKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE

Q6P2Z6 60S ribosomal export protein NMD3

5.0e-106

41.68

Show/hide

Query:  MSGEQQQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWT
        M G       ++LCC+CGIP+ PN ANMCV CL  +VDI+EG+ KQ+++ FC  C  YLQPP TW++  LES+ELLT C+K+LK NL+KV+L+ A F+WT
Subjt:  MSGEQQQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWT

Query:  EPHSKRIKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------
        EPHSKR+KVKL +QKEV++GAIL+Q +V +Y+VQ Q+C  C R  A  D W A VQ+RQ V H++TF +LEQ ILKH    N +R+K++  G        
Subjt:  EPHSKRIKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------

Query:  ----KLLQSGVATINDLFHIMLRVTLTIMSTQ-------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRT
            K+++    T+   F    R+    + T        FSV+I P+C+++L+CL PK+A S GN+  + IC +VT+ I L+DP TL+   +D + YWR+
Subjt:  ----KLLQSGVATINDLFHIMLRVTLTIMSTQ-------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRT

Query:  SFKSLLTSRQLVEYIVIDIENISTEVNVCG-----SKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEA
         F SL   +QL E+IV+D + +       G     +K+ILA+V V + S+       +  RTHLG +L PGD VLG+D+   N ND  ++K     IP+ 
Subjt:  SFKSLLTSRQLVEYIVIDIENISTEVNVCG-----SKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEA

Query:  ILIKKSYEEKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE
        +LIKKSY+  +R+   + R+WKLK +E D +  D      D+R  +Y+ FL DLEE+  +R N+++Y+N        TD E  P + + E+L  L I+ +
Subjt:  ILIKKSYEEKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKE

Query:  TRDYGDNDMLS
               +ML+
Subjt:  TRDYGDNDMLS

Q96D46 60S ribosomal export protein NMD3

1.2e-99

40.72

Show/hide

Query:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL
        +LCC+CG+P+ PN AN+CV CL S+VDI++G+ KQ++I+FC  C  Y QPP TW++  LES+ELL  C+K++K  L+KV+LV A FVWTEPHSKR+KVKL
Subjt:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL

Query:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KLLQSGV
         +QKEV++GAIL+Q +V +YVVQ Q+C  C R  A  D W A +Q+RQ   H++TF +LEQLILK+G   N +RIK++  G            K+++   
Subjt:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG------------KLLQSGV

Query:  ATINDLFHIMLRV--------TLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQ
         T+   +    R+        T    ST FSV+I PIC+++++CL PK+A S GN+  + +C +VT+AI L+DP TL+   +D   +W   F SL   +Q
Subjt:  ATINDLFHIMLRV--------TLTIMSTQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQ

Query:  LVEYIVIDIENISTEVNVCGS-----KYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEK
        L E+IV++   +       G+     K+ L +V V + S+    D  +  RTHLG +L PGD VLG+D+   N ND  ++K    ++P+ +LIKKSY+  
Subjt:  LVEYIVIDIENISTEVNVCGS-----KYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEK

Query:  RRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDML
        +R+   + R+WKLK L  + +  D      D+R  +Y+ FL DLEE+  +R N+++YR+        TD E  P + + E+L  L I+++        ML
Subjt:  RRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDML

Query:  S
        +
Subjt:  S

Q99L48 60S ribosomal export protein NMD3

4.1e-100

40.4

Show/hide

Query:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL
        +LCC+CG+P+ PN AN+CV CL S+VDI++G+ KQ++I+FC  C  Y QPP +W++  LES+ELL  C+K++K  L+KV+LV A FVWTEPHSKR+KVKL
Subjt:  VLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLK-NLNKVKLVHAEFVWTEPHSKRIKVKL

Query:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSGVATIN
         +QKEV++GAIL+Q +V +YVVQ Q+C  C R  A  D W A +Q+RQ   H++TF +LEQLILK+G   N +RIK++  G        +  Q  V  + 
Subjt:  KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQG--------KLLQSGVATIN

Query:  DLFHIMLRVTLTIMS-----------TQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQL
         +     + +  ++S           + FSV+I PIC+++++CL PK+A S GN+  + IC +VT+AI L+DP TL+   +D + +W   F SL   +QL
Subjt:  DLFHIMLRVTLTIMS-----------TQFSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQL

Query:  VEYIVIDIENI-----STEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR
         E+IVI+   +     S    V   K+ L +V + + S+    D  +  RTHLG +L PGD VLG+D+   N ND  ++K    ++P+ +LIKKSY+  +
Subjt:  VEYIVIDIENI-----STEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKR

Query:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDMLS
        R+   + R+WKLK L  D +  D      D+R  +Y+ FL DLEE+  +R ++++YR+        TD E  P + + E+L  L I+++        M+S
Subjt:  RRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDMLS

Arabidopsis top hits

e value

%identity

Alignment

AT2G03820.1 nonsense-mediated mRNA decay NMD3 family protein

2.0e-163

61.03

Show/hide

Query:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR
        QQ I SVLCCKCG+PM PNAANMCV CL SEVDITEGLQK + I +CP C  YLQPP+TW+K Q ESKELLTFCIKRLKNLNKVKL +AEFVWTEPHSKR
Subjt:  QQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKR

Query:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGKLLQSGVATINDLF
        IKVKL VQ EVL+GA+LEQSY  EY V+D LC SCSR  AN DQWVAS+QLRQHV HRRTF +LEQLIL+H AA  A+RI+Q+DQG     G  +  + F
Subjt:  IKVKLKVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGKLLQSGVATINDLF

Query:  HIMLRVTLTIMSTQ-------------------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL
           LR  + I   Q                   +SVKI P+CREDL+CLP KVA+  GNLGPLV+CTKV++ ITL+DP TLR   LDA QYWR+ F+S L
Subjt:  HIMLRVTLTIMSTQ-------------------FSVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLL

Query:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYK---GLQIPEAILIKKSYE
        TSRQLV+Y V D+E    E  V G KY L+ VQ+AR SD G+   +F  +THLG ILKPGD  LGYD+YGAN ND E++KY+      +PEAILIKK YE
Subjt:  TSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRNDTIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYK---GLQIPEAILIKKSYE

Query:  EKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSE---RTDVEDVPLVPVEELLAVLDINKETRDYG
        E+R R   K R+WKLKSL M++D+    R + +K + EYE+FLRDLEENPE+RFNISLYR+ +YQ SE    TD E  P VP+EELLA LD++ E  D  
Subjt:  EKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNISLYRNGEYQTSE---RTDVEDVPLVPVEELLAVLDINKETRDYG

Query:  DND
        D D
Subjt:  DND

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTCTGGAGAACAACAACAGCCTATTCGTAGTGTTTTATGCTGTAAATGTGGAATCCCTATGGTACCAAATGCTGCCAATATGTGCGTTAAGTGTTTGTGTTCTGAAGT
TGACATCACAGAAGGTTTACAAAAGCAATTGACTATTACGTTTTGTCCGGTGTGCGTGAGTTACTTGCAGCCACCGCGAACTTGGCTTAAAGCACAACTAGAATCAAAGG
AACTATTGACATTCTGTATCAAAAGGTTAAAGAATCTAAATAAGGTCAAACTGGTACATGCCGAATTTGTTTGGACCGAACCACATTCGAAGAGGATCAAGGTCAAGTTG
AAGGTTCAGAAAGAAGTCCTTCATGGAGCAATTTTGGAACAGTCCTATGTTGCAGAGTATGTTGTGCAGGATCAATTGTGTATCTCTTGCTCGAGGGAAGCGGCCAACTC
TGACCAGTGGGTGGCTTCTGTTCAACTCAGGCAGCACGTCCCACATCGGCGCACCTTTTTGTTCTTGGAGCAACTGATACTAAAGCACGGTGCTGCTGACAATGCCGTAA
GGATCAAGCAGATGGATCAAGGAAAGTTGCTCCAATCCGGGGTCGCCACGATAAACGACTTGTTTCACATAATGTTAAGAGTAACACTCACAATTATGAGCACACAATTC
TCTGTCAAAATCTCCCCAATATGCCGTGAGGATTTGATTTGCTTGCCTCCTAAAGTTGCTGCTAGTTTCGGCAATCTTGGTCCTTTAGTGATTTGCACTAAGGTTACCAA
TGCCATTACTTTGGTTGACCCATTTACCTTAAGGCACTGCTGCTTGGATGCTGATCAGTATTGGAGGACATCCTTTAAGTCTCTACTTACTAGCAGACAACTTGTGGAAT
ATATAGTTATAGATATAGAGAATATCTCTACTGAAGTGAATGTCTGTGGTTCGAAGTATATTTTGGCCGATGTTCAGGTAGCTCGTGTATCTGATTTTGGAAGGAACGAC
ACAATATTCTCCACAAGAACCCATCTGGGTCGTATTCTGAAGCCTGGGGATAATGTCCTTGGTTATGATATGTATGGAGCCAATAGTAATGATATGGAGCTAGACAAATA
TAAGGGCCTTCAGATTCCAGAAGCAATTCTAATCAAGAAGAGTTACGAAGAAAAGCGCCGAAGAATGCTCGGAAAGCCTAGATCATGGAAGCTTAAATCTCTTGAAATGG
ATGTTGATGAAAAAGATAATAGTAGAGCAGAGCAAGATAAGAGGAACTCAGAATATGAACAGTTTTTGAGAGATTTGGAGGAGAATCCAGAGATGAGGTTCAACATATCA
TTGTACCGAAATGGAGAATACCAAACTTCTGAAAGGACTGATGTGGAAGATGTACCTTTGGTACCAGTTGAGGAGTTGCTTGCTGTTCTTGATATTAATAAAGAGACTAG
AGACTATGGAGACAATGACATGCTAAGTATGTAG

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MSGEQQQPIRSVLCCKCGIPMVPNAANMCVKCLCSEVDITEGLQKQLTITFCPVCVSYLQPPRTWLKAQLESKELLTFCIKRLKNLNKVKLVHAEFVWTEPHSKRIKVKL
KVQKEVLHGAILEQSYVAEYVVQDQLCISCSREAANSDQWVASVQLRQHVPHRRTFLFLEQLILKHGAADNAVRIKQMDQGKLLQSGVATINDLFHIMLRVTLTIMSTQF
SVKISPICREDLICLPPKVAASFGNLGPLVICTKVTNAITLVDPFTLRHCCLDADQYWRTSFKSLLTSRQLVEYIVIDIENISTEVNVCGSKYILADVQVARVSDFGRND
TIFSTRTHLGRILKPGDNVLGYDMYGANSNDMELDKYKGLQIPEAILIKKSYEEKRRRMLGKPRSWKLKSLEMDVDEKDNSRAEQDKRNSEYEQFLRDLEENPEMRFNIS
LYRNGEYQTSERTDVEDVPLVPVEELLAVLDINKETRDYGDNDMLSM

Sed0010163 (gene) of Chayote v1 genome