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Sed0010189 (gene) of Chayote v1 genome

Gene IDSed0010189
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG04:41985883..41986676
RNA-Seq ExpressionSed0010189
SyntenySed0010189
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0064334.1 RING-H2 finger protein ATL39-like [Cucumis melo var. makuwa]8.1e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP +SSP V+HYTVTLDLR++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  V+FGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+AG+NCQALPEC+HFFHSECI+VW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

XP_008453063.1 PREDICTED: RING-H2 finger protein ATL39-like [Cucumis melo]8.1e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP +SSP V+HYTVTLDLR++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  V+FGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+AG+NCQALPEC+HFFHSECI+VW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

XP_022936829.1 RING-H2 finger protein ATL39-like [Cucurbita moschata]7.1e-5674.38Show/hide
Query:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE
        MADPLL LLFPME+ V  ++S P VVHYTVTLDLR++++FS ++ILFFLFL+HV+ GFLQWFL  RRG    GDVEA  GEE   RRAEK+PA VRFGSE
Subjt:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE

Query:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        +MVRRR  SEEECAICLEEF+AG+NCQALPECNHFFHS+CIDVW SKKFTCPICR+C+AA
Subjt:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

XP_022976597.1 RING-H2 finger protein ATL39-like [Cucurbita maxima]4.2e-5674.38Show/hide
Query:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE
        MADPLL LLFPME+ V  ++S P +VHYTVTLDLR++I+FS ++ILFFLFL+HV+ GFLQWFL  RRG    GDVEA  GEE   RRAEK+PA VRFGSE
Subjt:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE

Query:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        +MVRRR  SEEECAICLEEF+AG+NCQALPECNHFFHS+CIDVW SKKFTCPICR+C+AA
Subjt:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

XP_031740449.1 RING-H2 finger protein ATL39-like [Cucumis sativus]8.1e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP + SP V+HYTVTLD+R++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  VRFGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+ G+NCQALPECNHFFHSECIDVW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

TrEMBL top hitse value%identityAlignment
A0A0A0L062 RING-type domain-containing protein3.9e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP + SP V+HYTVTLD+R++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  VRFGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+ G+NCQALPECNHFFHSECIDVW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

A0A1S3BVC7 RING-H2 finger protein ATL39-like3.9e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP +SSP V+HYTVTLDLR++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  V+FGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+AG+NCQALPEC+HFFHSECI+VW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

A0A5A7VAT0 RING-H2 finger protein ATL39-like3.9e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP +SSP V+HYTVTLDLR++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  V+FGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+AG+NCQALPEC+HFFHSECI+VW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

A0A5D3D9M0 RING-H2 finger protein ATL39-like3.9e-6077.64Show/hide
Query:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS
        M DPLL LLFPME+ VP +SSP V+HYTVTLDLR++I+FSFS+ILFFLFLFHV+ GFLQWFLDVRR GGG  DVEA   EER   RAEK  LP  V+FGS
Subjt:  MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEER---RAEK--LPAVVRFGS

Query:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        EKMVRRR  SEEECAICLEEF+AG+NCQALPEC+HFFHSECI+VW SKKFTCPICRNC+AA
Subjt:  EKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

A0A6J1IG67 RING-H2 finger protein ATL39-like2.0e-5674.38Show/hide
Query:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE
        MADPLL LLFPME+ V  ++S P +VHYTVTLDLR++I+FS ++ILFFLFL+HV+ GFLQWFL  RRG    GDVEA  GEE   RRAEK+PA VRFGSE
Subjt:  MADPLLPLLFPMESTVPATSS-PAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEA--GEE---RRAEKLPAVVRFGSE

Query:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA
        +MVRRR  SEEECAICLEEF+AG+NCQALPECNHFFHS+CIDVW SKKFTCPICR+C+AA
Subjt:  KMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA

SwissProt top hitse value%identityAlignment
P0C034 RING-H2 finger protein ATL101.6e-1343.21Show/hide
Query:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        G    G +++A ++  VV +  E  +      +EEC ICL +FV+G+  + LP+CNH FH  CID WL +  TCP CRNCL
Subjt:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

Q6NML0 E3 ubiquitin-protein ligase ATL763.8e-1258.33Show/hide
Query:  EECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        EEC ICL +FV+G+  + LP+CNH FH  CID WL    TCP CR+CL
Subjt:  EECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

Q94BY6 RING-H2 finger protein ATL758.6e-1240.74Show/hide
Query:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        G    G  ++A ++  VV +  E  +       EEC ICL +FV+G+  + LP+C+H FH  CID WL +  TCP CR+CL
Subjt:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

Q9LS99 RING-H2 finger protein ATL772.0e-1345.57Show/hide
Query:  VEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        V  G +++A K+  VV +  E  +       EEC ICL +FVAG+  + LP+CNH FH  CID WL++  TCP CR+CL
Subjt:  VEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

Q9XF63 RING-H2 finger protein ATL32.9e-1262.22Show/hide
Query:  ECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRN
        EC+ICL E V GD  + LP+CNH FH ECID+W     TCPICRN
Subjt:  ECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRN

Arabidopsis top hitse value%identityAlignment
AT1G49200.1 RING/U-box superfamily protein6.1e-1340.74Show/hide
Query:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        G    G  ++A ++  VV +  E  +       EEC ICL +FV+G+  + LP+C+H FH  CID WL +  TCP CR+CL
Subjt:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

AT1G49210.1 RING/U-box superfamily protein2.7e-1358.33Show/hide
Query:  EECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        EEC ICL +FV+G+  + LP+CNH FH  CID WL    TCP CR+CL
Subjt:  EECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

AT1G49220.1 RING/U-box superfamily protein1.1e-1443.21Show/hide
Query:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        G    G +++A ++  VV +  E  +      +EEC ICL +FV+G+  + LP+CNH FH  CID WL +  TCP CRNCL
Subjt:  GDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL

AT1G72310.1 RING/U-box superfamily protein2.1e-1362.22Show/hide
Query:  ECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRN
        EC+ICL E V GD  + LP+CNH FH ECID+W     TCPICRN
Subjt:  ECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRN

AT3G18773.1 RING/U-box superfamily protein1.4e-1445.57Show/hide
Query:  VEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL
        V  G +++A K+  VV +  E  +       EEC ICL +FVAG+  + LP+CNH FH  CID WL++  TCP CR+CL
Subjt:  VEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAICLEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGGATCCATTACTCCCACTCCTCTTCCCCATGGAATCGACGGTACCGGCGACCTCGTCGCCGGCAGTGGTCCACTACACCGTAACCCTAGACCTCCGCAGCGCGAT
CGTGTTCTCCTTCTCCGTGATCCTCTTCTTCCTGTTCCTGTTCCACGTGGTCGGCGGCTTCCTCCAGTGGTTCCTGGACGTCCGGCGGGGCGGCGGAGGGATGGGCGACG
TGGAGGCGGGGGAGGAGCGGCGGGCGGAGAAGCTGCCGGCGGTTGTGAGGTTCGGGAGCGAGAAAATGGTGCGGCGGAGGAGCGAGAGCGAGGAGGAATGTGCGATCTGC
TTGGAGGAGTTTGTGGCCGGAGATAACTGCCAGGCGCTGCCGGAATGTAACCATTTTTTCCATTCGGAGTGTATTGATGTTTGGTTGAGTAAGAAATTTACTTGCCCTAT
CTGTCGGAATTGCCTTGCGGCTTAG
mRNA sequenceShow/hide mRNA sequence
AAATTCCAACCCCTAAAAACCCCCAAACAGAAAACTCACATTTCCCAAATCCATTTAAAACCCCCAAATCGCTAATCCCCTTCTCATCCAAATCAAAAACAAAATTACCC
AAAAACCTCCAAAGAGCTTCAACAATGGCGGATCCATTACTCCCACTCCTCTTCCCCATGGAATCGACGGTACCGGCGACCTCGTCGCCGGCAGTGGTCCACTACACCGT
AACCCTAGACCTCCGCAGCGCGATCGTGTTCTCCTTCTCCGTGATCCTCTTCTTCCTGTTCCTGTTCCACGTGGTCGGCGGCTTCCTCCAGTGGTTCCTGGACGTCCGGC
GGGGCGGCGGAGGGATGGGCGACGTGGAGGCGGGGGAGGAGCGGCGGGCGGAGAAGCTGCCGGCGGTTGTGAGGTTCGGGAGCGAGAAAATGGTGCGGCGGAGGAGCGAG
AGCGAGGAGGAATGTGCGATCTGCTTGGAGGAGTTTGTGGCCGGAGATAACTGCCAGGCGCTGCCGGAATGTAACCATTTTTTCCATTCGGAGTGTATTGATGTTTGGTT
GAGTAAGAAATTTACTTGCCCTATCTGTCGGAATTGCCTTGCGGCTTAGGGATTCTTGTATCCATCAACTCCCTTCTTCAACCAATTTTTATTTTGTTGTTTTCGGGTTG
TATATAATTTGGACAATTGTATATATATATATATATATATAATATTATACAAATTATATGCATATGTATGTTTTATGTTTATTTTGTCCCCACTTTTCTGCCTTTACTTG
TGAAGAATTTATTTTTGTCTTGTG
Protein sequenceShow/hide protein sequence
MADPLLPLLFPMESTVPATSSPAVVHYTVTLDLRSAIVFSFSVILFFLFLFHVVGGFLQWFLDVRRGGGGMGDVEAGEERRAEKLPAVVRFGSEKMVRRRSESEEECAIC
LEEFVAGDNCQALPECNHFFHSECIDVWLSKKFTCPICRNCLAA