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Sed0010224 (gene) of Chayote v1 genome

Gene IDSed0010224
OrganismSechium edule (Chayote v1)
Descriptionhistone deacetylase complex subunit SAP18-like
Genome locationLG03:8264385..8266298
RNA-Seq ExpressionSed0010224
SyntenySed0010224
Gene Ontology termsGO:0045892 - negative regulation of transcription, DNA-templated (biological process)
GO:0005634 - nucleus (cellular component)
GO:0003714 - transcription corepressor activity (molecular function)
InterPro domainsIPR010516 - Sin3 associated polypeptide p18
IPR042534 - Sin3 associated polypeptide p18 superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004147963.1 histone deacetylase complex subunit SAP18 [Cucumis sativus]1.5e-7891.67Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEK SGAATA  P QGRPS RPLPPP  +KAPPP PRPRF+PVDREKTCPLLLRVFTKVGGHHTD+DFA+RGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_008448944.1 PREDICTED: histone deacetylase complex subunit SAP18-like [Cucumis melo]4.2e-7891.67Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEK SGAA A  P QGRPS RPLPPP  +KAPPP PRPRF+PVDREKTCPLLLRVFTKVGGHHTD+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_022152730.1 histone deacetylase complex subunit SAP18-like [Momordica charantia]9.1e-8194.05Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEKMSGAATAPP  QGRPSARPLPPP   KAPPPPPRPRF+PVDREKTCPLLLRVFTKVGGHH+D+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_022946300.1 histone deacetylase complex subunit SAP18-like [Cucurbita moschata]2.1e-7791.07Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEKMSGAATAPP  QGRPSARPLPPP  +KAPPPPPR RF+PVDREKTCPLLLRVFTKVG HHTD+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG T+SYGNGRRLD SKALGELDFQIGDYLDVAI+
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

XP_038905116.1 histone deacetylase complex subunit SAP18-like [Benincasa hispida]7.7e-8094.05Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEKMSGAATA  P+QGRPS RPLPPP   KAPPPPPRPRF+PVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

TrEMBL top hitse value%identityAlignment
A0A0A0L751 Uncharacterized protein7.1e-7991.67Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEK SGAATA  P QGRPS RPLPPP  +KAPPP PRPRF+PVDREKTCPLLLRVFTKVGGHHTD+DFA+RGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A1S3BLT9 histone deacetylase complex subunit SAP18-like2.1e-7891.67Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEK SGAA A  P QGRPS RPLPPP  +KAPPP PRPRF+PVDREKTCPLLLRVFTKVGGHHTD+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A5D3D7E1 Histone deacetylase complex subunit SAP18-like2.1e-7891.67Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEK SGAA A  P QGRPS RPLPPP  +KAPPP PRPRF+PVDREKTCPLLLRVFTKVGGHHTD+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A6J1DES5 histone deacetylase complex subunit SAP18-like4.4e-8194.05Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEKMSGAATAPP  QGRPSARPLPPP   KAPPPPPRPRF+PVDREKTCPLLLRVFTKVGGHH+D+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMT+SYGNGRRLDDSKALGELDFQIGDYLDVAIL
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

A0A6J1KTJ0 histone deacetylase complex subunit SAP18-like1.0e-7791.07Show/hide
Query:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD
        MDKRSRDEKMSGAATAPP  QGRPSARPLPPP  +KAPPPPPR RF+PVDREKTCPLLLRVFTKVG HHTD+DFAIRGKEPKDEVQIYTWKDATL ELTD
Subjt:  MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTD

Query:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL
        LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLK VG T+SYGNGRRLD SKALGELDFQIGDYLDVAI+
Subjt:  LVKEVAPEARRRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL

SwissProt top hitse value%identityAlignment
O00422 Histone deacetylase complex subunit SAP186.4e-2956.91Show/hide
Query:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR
        +P+DREKTCPLLLRVFT   G HH  D+F+ RG  P  E+QIYTW DATL ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

O55128 Histone deacetylase complex subunit SAP188.4e-2956.91Show/hide
Query:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR
        +P+DREKTCPLLLRVFT   G HH  D+F+ RG  P  E+QIYTW DATL ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

O64644 Histone deacetylase complex subunit SAP181.1e-4967.57Show/hide
Query:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA
        A+ +   RPLPPPP       PPRP+ +PVDREKTCPLLLRVFTK GGHHT +D+A+RGKEPKDEVQIYTWKDA+L ELTDLVKEV+  ARRRNA+LSFA
Subjt:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA

Query:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI
        FVYP+ +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI

Q3T022 Histone deacetylase complex subunit SAP186.4e-2956.91Show/hide
Query:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR
        +P+DREKTCPLLLRVFT   G HH  D+F+ RG  P  E+QIYTW DATL ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

Q5RDT5 Histone deacetylase complex subunit SAP186.4e-2956.91Show/hide
Query:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR
        +P+DREKTCPLLLRVFT   G HH  D+F+ RG  P  E+QIYTW DATL ELT LVKEV PEAR++    +FA V+ D KR  + +K++G T S   G 
Subjt:  QPVDREKTCPLLLRVFTKVGG-HHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFAFVYPD-KRGRFVLKQVGMTYSYGNGR

Query:  RLDDSKALGELDFQIGDYLDVAI
          DDS  L    FQIGDYLD+AI
Subjt:  RLDDSKALGELDFQIGDYLDVAI

Arabidopsis top hitse value%identityAlignment
AT2G45640.1 SIN3 associated polypeptide P188.0e-5167.57Show/hide
Query:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA
        A+ +   RPLPPPP       PPRP+ +PVDREKTCPLLLRVFTK GGHHT +D+A+RGKEPKDEVQIYTWKDA+L ELTDLVKEV+  ARRRNA+LSFA
Subjt:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA

Query:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI
        FVYP+ +G + +++VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI

AT2G45640.2 SIN3 associated polypeptide P187.5e-4967.57Show/hide
Query:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA
        A+ +   RPLPPPP       PPRP+ +PVDREKTCPLLLRVFTK GGHHT +D+A+RGKEPKDEVQIYTWKDA+L ELTDLVKEV+  ARRRNA+LSFA
Subjt:  AQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEARRRNAKLSFA

Query:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI
        FVYP+ +G +    VG T +Y N ++ DDSK L EL F+IGDYLDVAI
Subjt:  FVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAI


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCCGGCGCAAGGGAGACCGTCGGCGCGGCCGCTTCCTCCGCCTCCTCTCTCCAAAGC
TCCGCCGCCTCCTCCTCGCCCTCGTTTTCAACCCGTCGATCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACGAAGGTTGGAGGTCACCACACTGATGACGATT
TTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTTGGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGA
AGAAGAAATGCAAAACTTTCTTTCGCTTTTGTTTATCCCGATAAGCGTGGTCGATTTGTTTTGAAACAGGTGGGAATGACATATTCTTATGGAAATGGGAGGAGATTAGA
TGACAGCAAAGCGTTGGGTGAACTGGACTTCCAGATTGGAGACTATTTGGACGTGGCAATTCTGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGACAAGAGAAGCAGAGATGAGAAGATGAGCGGAGCTGCAACTGCTCCGCCGCCGGCGCAAGGGAGACCGTCGGCGCGGCCGCTTCCTCCGCCTCCTCTCTCCAAAGC
TCCGCCGCCTCCTCCTCGCCCTCGTTTTCAACCCGTCGATCGCGAAAAGACTTGCCCTTTGTTGCTTCGCGTTTTTACGAAGGTTGGAGGTCACCACACTGATGACGATT
TTGCAATTAGAGGTAAGGAACCCAAAGATGAGGTTCAGATTTATACATGGAAAGATGCAACACTTGGGGAGCTGACCGATCTAGTTAAGGAGGTTGCTCCAGAGGCAAGA
AGAAGAAATGCAAAACTTTCTTTCGCTTTTGTTTATCCCGATAAGCGTGGTCGATTTGTTTTGAAACAGGTGGGAATGACATATTCTTATGGAAATGGGAGGAGATTAGA
TGACAGCAAAGCGTTGGGTGAACTGGACTTCCAGATTGGAGACTATTTGGACGTGGCAATTCTGTAG
Protein sequenceShow/hide protein sequence
MDKRSRDEKMSGAATAPPPAQGRPSARPLPPPPLSKAPPPPPRPRFQPVDREKTCPLLLRVFTKVGGHHTDDDFAIRGKEPKDEVQIYTWKDATLGELTDLVKEVAPEAR
RRNAKLSFAFVYPDKRGRFVLKQVGMTYSYGNGRRLDDSKALGELDFQIGDYLDVAIL