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Sed0010248 (gene) of Chayote v1 genome

Gene IDSed0010248
OrganismSechium edule (Chayote v1)
DescriptionPlant transposase
Genome locationLG06:6930791..6934433
RNA-Seq ExpressionSed0010248
SyntenySed0010248
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0032201.1 Plant transposase [Cucumis melo var. makuwa]6.2e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLGPD+ ++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

KAA0038002.1 Plant transposase [Cucumis melo var. makuwa]1.6e-1661.36Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYR
        S+++  DA+SKVLGPD+G++RGLGFGVT SK+S S  KDKTIASLE K +NLTSDV+ LK VV+SLLKD     KE+ S++N N + R
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYR

KAA0042856.1 Plant transposase [Cucumis melo var. makuwa]3.6e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLGPD+ ++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

TYK28558.1 Plant transposase [Cucumis melo var. makuwa]6.2e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLG D+G++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

XP_038900033.1 uncharacterized protein LOC120087197 [Benincasa hispida]2.3e-1862.79Show/hide
Query:  TSHSTNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNV
        TS S ++  DA+S+V G +  H+RGLGFGVT SKLS ST KD+TIASLE KCNNLT+DV+ LK +++SL++DKE RMKE+ SNN V
Subjt:  TSHSTNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNV

TrEMBL top hitse value%identityAlignment
A0A5A7SRN7 Plant transposase3.0e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLGPD+ ++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

A0A5A7T3D8 Plant transposase7.9e-1761.36Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYR
        S+++  DA+SKVLGPD+G++RGLGFGVT SK+S S  KDKTIASLE K +NLTSDV+ LK VV+SLLKD     KE+ S++N N + R
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYR

A0A5A7TLJ2 Plant transposase1.8e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLGPD+ ++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

A0A5A7UH01 Transposase3.9e-1656.38Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHLLK
        S+++  DA+S+VLGPD+G+++GLGF VT SK+S S   DKTI SLENKC+NLTSDV+ LK VV+SLLKD     KE+ S++N N      HL+K
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHLLK

A0A5D3DYN2 Plant transposase3.0e-1656.52Show/hide
Query:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL
        S+++  DA+S+VLG D+G++RGLGFGVT SK+S S  KDKTI SLE KC+NLTSDV+ LK VV+SLLKDKE +  +  SN+ V  +    H+
Subjt:  STNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHL

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACGTCTCATTCAACTAATGTGGCTCGTGATGCATTAAGTAAAGTATTGGGTCCTGATCGTGGTCATATACGAGGATTAGGATTTGGAGTAACGAAGTCGAAGTTGTC
CATATCAACTATAAAAGATAAAACTATTGCATCGCTTGAAAATAAATGCAATAATCTAACATCGGATGTGAATGTGTTGAAGGAAGTAGTATCATCTTTATTGAAGGACA
AGGAAGATAGAATGAAGGAACAAGCATCTAACAATAATGTTAATATAATGTATCGGCATCAACACCTACTCAAGCTCCCATCATAA
mRNA sequenceShow/hide mRNA sequence
TTCATTTTCTCTTTTGACACAAACACTGTCATTCATTTTCTCTCGCCCTCGCATCAATCTTATTTTTTCTCTTCTTGCACGTTCATCAGCACCACCGTCTCTACACTCAA
TCATTCATCAAGAAATTTTGGCAAATATTATGACTTCATCATTTATCAAAAGAACTTAGGATTGATTTTATTTCAAGAAATTGTGGAGGAAAAGCGAGCTATTCTCAACG
TCTTCTAGTGCATAACAAAACCCTAAATGTGTGGAGGCTGTGGACGAGGAAGGAGAAGGAGATTGCAGTTGTCAGCCACAGTGGATTCTTATTTCATGCATTAAGTGCAT
TTGGAAATGACTGCCATCCATCTGTAAAGGAAAAAATCTTCAAACGGAGCAAATCTCACAAAATGTAAGTAATGAAGAAATGACGTCTCATTCAACTAATGTGGCTCGTG
ATGCATTAAGTAAAGTATTGGGTCCTGATCGTGGTCATATACGAGGATTAGGATTTGGAGTAACGAAGTCGAAGTTGTCCATATCAACTATAAAAGATAAAACTATTGCA
TCGCTTGAAAATAAATGCAATAATCTAACATCGGATGTGAATGTGTTGAAGGAAGTAGTATCATCTTTATTGAAGGACAAGGAAGATAGAATGAAGGAACAAGCATCTAA
CAATAATGTTAATATAATGTATCGGCATCAACACCTACTCAAGCTCCCATCATAAATTCTCCACTGAGTGTTACAACCAATATTCCTCCCCACAAGTGTATGTTGTTAGA
TTGGGTTGGTTCAGGAGAAGTAATTGCCGAAGGGAGATGGTCTTCTAATGATCCATCAACACTTGTCCATCACATTCCTCTTGGTCCTAATGCAGTACGTGTGTGGGTTG
ATTCAGTAAAAAAGTCTAATTCATTCTTATGGAGGCCTACATCTGATATTGTTGTTATTGATGATGCTGTGGGTACTACAATTGCATGGCCAATTGATAAAGTCAAAATA
TGT
Protein sequenceShow/hide protein sequence
MTSHSTNVARDALSKVLGPDRGHIRGLGFGVTKSKLSISTIKDKTIASLENKCNNLTSDVNVLKEVVSSLLKDKEDRMKEQASNNNVNIMYRHQHLLKLPS