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Sed0010256 (gene) of Chayote v1 genome

Gene IDSed0010256
OrganismSechium edule (Chayote v1)
DescriptionTransmembrane protein 230
Genome locationLG03:1460810..1462660
RNA-Seq ExpressionSed0010256
SyntenySed0010256
Gene Ontology termsGO:0005768 - endosome (cellular component)
GO:0005776 - autophagosome (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_008459349.1 PREDICTED: transmembrane protein 230 [Cucumis melo]8.6e-5491.38Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRN+RYSSLA+DDND+D +GS++DPRFYYTPKAFDKIPWKSIALA+FLL LGSLLLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_022939930.1 transmembrane protein 230-like [Cucurbita moschata]1.3e-5493.1Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_022961740.1 transmembrane protein 230-like [Cucurbita moschata]9.2e-5694.83Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_022990725.1 transmembrane protein 230-like [Cucurbita maxima]1.0e-5493.97Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRR+VRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLL LGSLLLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGY FASIPDY
Subjt:  AWRGANGYRFASIPDY

XP_023521905.1 transmembrane protein 230-like [Cucurbita pepo subsp. pepo]3.1e-5695.69Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLL LGSLLLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

TrEMBL top hitse value%identityAlignment
A0A1S3C9X7 Transmembrane protein 2304.2e-5491.38Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRN+RYSSLA+DDND+D +GS++DPRFYYTPKAFDKIPWKSIALA+FLL LGSLLLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1FP54 Transmembrane protein 2306.4e-5593.1Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1HAY7 Transmembrane protein 2304.4e-5694.83Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1JQW3 Transmembrane protein 2304.9e-5593.97Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRR+VRYSSLA DDNDLDY+GSQYDPRFYYTPKAFDKIPWKSIALA+FLL LGSLLLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGY FASIPDY
Subjt:  AWRGANGYRFASIPDY

A0A6J1K312 Transmembrane protein 2306.4e-5593.1Show/hide
Query:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY
        MASRRNVRYSSL+TDDNDLD DG+Q+DPRFYYTPKAFDKIPWKSIALA+FLL LGS LLFLSYFVLTGHMAGEKSQAYGLLALG LTFLPGFYETRIAYY
Subjt:  MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYY

Query:  AWRGANGYRFASIPDY
        AWRGANGYRFASIPDY
Subjt:  AWRGANGYRFASIPDY

SwissProt top hitse value%identityAlignment
Q5BJP5 Transmembrane protein 2301.5e-1340.18Show/hide
Query:  VRYSSL-ATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS L +TDD  +D    +  P          KIP+K+IALA  L  +G+ L+ +   +L+G+++ G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSL-ATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q5R8X3 Transmembrane protein 2301.5e-1340.54Show/hide
Query:  VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGA
        V+YS L++ D+         D +F  TP    KIP+K+IALA  L  +G+ L+ +   +L+G+++ G   +A  +L +G+L FLPGFY  RIAYYA +G 
Subjt:  VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGA

Query:  NGYRFASIPDY
         GY +  IPD+
Subjt:  NGYRFASIPDY

Q5ZLH4 Transmembrane protein 2303.1e-1441.07Show/hide
Query:  VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS LA TDD  +D    +  P          KIP+K+IALA+ L  +G+ L+ +   +L G+++ G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q8CIB6 Transmembrane protein 2306.9e-1441.07Show/hide
Query:  VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG
        V+YS LA TDD  +D    +  P          KIP+K+IALA  L  +G+ L+ +   +L+G+++ G   +A  +L +G+L FLPGFY  RIAYYA +G
Subjt:  VRYSSLA-TDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRG

Query:  ANGYRFASIPDY
          GY +  IPD+
Subjt:  ANGYRFASIPDY

Q96A57 Transmembrane protein 2309.0e-1440.54Show/hide
Query:  VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGA
        V+YS L++ D+         D +F  TP    KIP+K+IALA  L  +G+ L+ +   +L+G+++ G   +A  +L +G+L FLPGFY  RIAYYA +G 
Subjt:  VRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMA-GEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGA

Query:  NGYRFASIPDY
         GY +  IPD+
Subjt:  NGYRFASIPDY

Arabidopsis top hitse value%identityAlignment
AT2G19350.1 Eukaryotic protein of unknown function (DUF872)1.1e-1143.24Show/hide
Query:  PWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K I+LA+ LL  G+L + L +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGANGYRFASIP

AT3G29170.1 Eukaryotic protein of unknown function (DUF872)5.2e-4165.29Show/hide
Query:  MASRRNVRYSSLATDDNDLDY-----DGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYET
        MASRR+VRY+ L  D++D  Y     +   +DPRF Y+PKAFD++PWKSIALA+FLL LG LLL LS+F+  GHM G+ SQ Y LL LG+LTFLPGFYET
Subjt:  MASRRNVRYSSLATDDNDLDY-----DGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYET

Query:  RIAYYAWRGANGYRFASIPDY
        RIAYY+WRGA GYRFA+IP Y
Subjt:  RIAYYAWRGANGYRFASIPDY

AT4G29850.1 Eukaryotic protein of unknown function (DUF872)1.9e-1143.24Show/hide
Query:  PWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGANGYRFASIP
        P K IALA+ LL  G+L +   +F+    + G++      + LG L F+PGFY TRIAYYA++G  G+ F++IP
Subjt:  PWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGANGYRFASIP


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCATCTAGACGAAATGTTCGTTACAGCTCCCTTGCCACTGATGATAACGATCTTGATTATGATGGAAGTCAATATGACCCTCGTTTTTACTATACACCAAAAGCTTT
TGACAAGATCCCGTGGAAATCCATTGCTCTTGCAATGTTCCTGTTATCTCTTGGGTCATTGCTTCTCTTTCTTTCGTATTTCGTATTAACGGGCCACATGGCAGGAGAGA
AATCACAAGCTTATGGTCTTTTAGCGTTGGGGGTTCTTACCTTCCTCCCAGGCTTTTACGAGACGAGGATTGCTTATTATGCATGGAGGGGTGCCAACGGATATCGCTTT
GCTTCCATTCCTGATTACTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAGCAGTCGCCGACGGAATTTCTCTACTCAGGTGAGATTTTCGATCAAGTTTCTCTCCGACTTTTCATTCCGGCGGAACTTCTGAAGTTGACGATCGATTTCGCATC
GCGTTATTTCAGGAATCAGTCATATCAATCGATCTCTCACCTCATTTTCTAGTTTTCGGGCTTTGGGAAGAAGATTGGACGGAAATTTCGACCTCTCTCACGGAGTATCG
CGAAAATTAAATAAGAAACCAACTTTCATTAAGCATATAAGTATCTGGTTAAGGTAGCTTGATTTAGTTGAAATTTGAGGAGTGCATTCTTGATATTTGCTGTGATGGCA
TCTAGACGAAATGTTCGTTACAGCTCCCTTGCCACTGATGATAACGATCTTGATTATGATGGAAGTCAATATGACCCTCGTTTTTACTATACACCAAAAGCTTTTGACAA
GATCCCGTGGAAATCCATTGCTCTTGCAATGTTCCTGTTATCTCTTGGGTCATTGCTTCTCTTTCTTTCGTATTTCGTATTAACGGGCCACATGGCAGGAGAGAAATCAC
AAGCTTATGGTCTTTTAGCGTTGGGGGTTCTTACCTTCCTCCCAGGCTTTTACGAGACGAGGATTGCTTATTATGCATGGAGGGGTGCCAACGGATATCGCTTTGCTTCC
ATTCCTGATTACTAGGTGTCCTTATCTCGATGGTGTATGCTTGTCTCATCTCTCTTTCAATGTAAACCTAGCATATAAAGTTAGAAGATGGTTCGTACAGAATCATGTCT
TTTGAGTTTGCAATGCATTCATCTTTTACTCCTCTTTCATCTCTATTTTACAACTTTCATTTTTTTTAAATATGTGAGTACCCGGCTCAGCCAACTTAACCGACCAAAAG
ATGTGATTGCTGAAAAACCTTGACAGGTTATGTGAAAGGAAAGCTTTAACATTTTTTCAAGTGATAGTAAC
Protein sequenceShow/hide protein sequence
MASRRNVRYSSLATDDNDLDYDGSQYDPRFYYTPKAFDKIPWKSIALAMFLLSLGSLLLFLSYFVLTGHMAGEKSQAYGLLALGVLTFLPGFYETRIAYYAWRGANGYRF
ASIPDY