; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010267 (gene) of Chayote v1 genome

Gene IDSed0010267
OrganismSechium edule (Chayote v1)
Descriptionnuclear transport factor 2
Genome locationLG12:3664718..3667875
RNA-Seq ExpressionSed0010267
SyntenySed0010267
Gene Ontology termsGO:0006913 - nucleocytoplasmic transport (biological process)
GO:0044613 - nuclear pore central transport channel (cellular component)
InterPro domainsIPR002075 - Nuclear transport factor 2
IPR018222 - Nuclear transport factor 2, eukaryote
IPR032710 - NTF2-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_022932693.1 nuclear transport factor 2B-like [Cucurbita moschata]3.8e-6094.31Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQCQHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

XP_022956152.1 nuclear transport factor 2B [Cucurbita moschata]2.9e-6095.12Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQCQHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHL+PTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

XP_022972136.1 nuclear transport factor 2B-like [Cucurbita maxima]5.0e-6094.31Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQCQHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

XP_022979987.1 nuclear transport factor 2B [Cucurbita maxima]3.8e-6095.12Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQG+ NIVAKLTSLPFQQCQHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

XP_023526029.1 nuclear transport factor 2B [Cucurbita pepo subsp. pepo]1.0e-6095.93Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQCQHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

TrEMBL top hitse value%identityAlignment
A0A4S4E6M5 NTF2 domain-containing protein1.2e-5992.68Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANRAGLANLYQ++SMLTFEGQKIQG+QNIVAKLTSLPFQQCQHS++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

A0A6J1F2G7 nuclear transport factor 2B-like1.8e-6094.31Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR+GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQCQHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

A0A6J1GVJ2 nuclear transport factor 2B1.4e-6095.12Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQG+ NIVAKLTSLPFQQCQHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHL+PTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

A0A6J1I548 nuclear transport factor 2B-like2.4e-6094.31Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANR GLANLYQD SMLTFEGQKIQG+QNIVAKLTSLPFQQCQHSVST+D QPSGP+GG+LVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

A0A6J1IQ79 nuclear transport factor 2B1.8e-6095.12Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFVDHYYSTFDANRAGLANLYQD SMLTFEGQKIQG+ NIVAKLTSLPFQQCQHSVST+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYVLNDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

SwissProt top hitse value%identityAlignment
Q75AA5 Nuclear transport factor 21.4e-3355.28Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MD  A+A+ F + YY+ FD +R+ L NLY+D SMLTFE  ++QGA++IV KL SLPFQ+ QH ++T+D+QP+ PNG +LV ++G+L +  EQ+A +FSQ+
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMP    S+YV NDIFRLNY+
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

Q96VN3 Nuclear transport factor 27.0e-3357.02Show/hide
Query:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMF
        D  ++A+ FV  YY TFD NRAGLA LY+D SMLTFE   IQG   I+ KLTSLPFQ+ QH VST+D+QPSG +GG+LV V+G L +  E++ + ++Q F
Subjt:  DPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMF

Query:  HLMPTPQGSFYVLNDIFRLNY
         LMP   GS++VLND+FRL Y
Subjt:  HLMPTPQGSFYVLNDIFRLNY

Q9C7F5 Nuclear transport factor 2B3.1e-5785.37Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYV NDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

Q9FZK4 Nuclear transport factor 2A1.2e-5382.11Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLT LPFQQC+H+++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHL+ + QG++YV NDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

Q9XJ54 Nuclear transport factor 29.2e-4166.39Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MD DAVAKAFV+HYY TFD NR  L +LYQD SMLTFEGQ+  GA  I  KL SLPF QC H ++T+D QPSGP GGMLVFVSG+L+   ++H LKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNY
        F L+P   G+FYV ND+FRLNY
Subjt:  FHLMPTPQGSFYVLNDIFRLNY

Arabidopsis top hitse value%identityAlignment
AT1G11570.1 NTF2-like1.2e-2758.25Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQM
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +ST+DSQPS   G  GG+LVFVSG++QL GE H L+FSQ+
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHL
        + L
Subjt:  FHL

AT1G11570.2 NTF2-like4.8e-3760.66Show/hide
Query:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQM
        + VA AFV+HYY  FD +R+ L++LY  TS+LTFEGQ I G  NI  KL  LPF QC H +ST+DSQPS   G  GG+LVFVSG++QL GE H L+FSQ 
Subjt:  DAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPS---GPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNY
        FHL+P  QGSF+V N++FRLNY
Subjt:  FHLMPTPQGSFYVLNDIFRLNY

AT1G27310.1 nuclear transport factor 2A8.8e-5582.11Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAVAKAFV+HYYSTFDANR GL +LYQ+ SMLTFEGQKIQG+QNIVAKLT LPFQQC+H+++T+D QPSGP GGMLVFVSGNLQLAGEQHALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHL+ + QG++YV NDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

AT1G27970.1 nuclear transport factor 2B2.2e-5885.37Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIFRLNYA
        FHLMPTPQGSFYV NDIFRLNYA
Subjt:  FHLMPTPQGSFYVLNDIFRLNYA

AT1G27970.2 nuclear transport factor 2B2.3e-5584.75Show/hide
Query:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM
        MDPDAV+KAFV+HYYSTFD NR GLA LYQ+ SMLTFEGQKIQG Q+IVAKLTSLPFQQC+H +ST+D QPSGP  GMLVFVSGNLQLAGE+HALKFSQM
Subjt:  MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQM

Query:  FHLMPTPQGSFYVLNDIF
        FHLMPTPQGSFYV NDIF
Subjt:  FHLMPTPQGSFYVLNDIF


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCACTACTACTCCACCTTCGACGCCAATCGAGCCGGCCTTGCTAATCTCTACCAGGATACTTCCATGTTGACGTT
TGAAGGTCAGAAGATCCAAGGCGCGCAGAATATTGTCGCTAAGCTCACCAGCCTTCCCTTCCAGCAGTGTCAGCACTCCGTTAGCACCATCGATTCGCAGCCTTCCGGCC
CCAATGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCCGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGGGAAGC
TTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCGTGA
mRNA sequenceShow/hide mRNA sequence
CCTCGACTTTCGTCTCCATTCTTCTCTCTGCAAAACTTGGCGTCGTTCTCAAGCAGGGCGGAGGGAAGCAAGTCTCTGTAAGCTCTTACCGGCGGCGAACTCGAACGTTA
CCGGAATGGATCCCGACGCGGTGGCTAAGGCATTCGTCGATCACTACTACTCCACCTTCGACGCCAATCGAGCCGGCCTTGCTAATCTCTACCAGGATACTTCCATGTTG
ACGTTTGAAGGTCAGAAGATCCAAGGCGCGCAGAATATTGTCGCTAAGCTCACCAGCCTTCCCTTCCAGCAGTGTCAGCACTCCGTTAGCACCATCGATTCGCAGCCTTC
CGGCCCCAATGGTGGCATGCTCGTCTTCGTCAGCGGCAATCTTCAACTCGCCGGTGAACAACATGCTCTCAAATTCAGTCAGATGTTCCATTTGATGCCAACCCCACAGG
GAAGCTTCTATGTGCTGAATGACATTTTCCGATTGAACTATGCGTGAAGTTGAGGTTTATCCATCATGGTATTGGAAGGCCTGAAATGTCAGGTTTATTCATCCAGTTTG
TTTTGCCACCGTTCAGTTTTTTAGACATTTCTATTTGGAACTTGGATCATATTTTATCGTGCCTATGCTTCAATGTGTGCCTTTGCGAATTTGAATTTCTTGATTGTCAT
TGAAAATTGATGAAATAGAACGCTTTCTTCGAATTCAAGTGATTTGCTCAATACTAAAATTTTAAGCTATGCAATAGAGGCTTTCTTCAATAGTGGTGCGCCTATTTAAA
TTGCTAGTGTATTGTTATATGTACGAAAATCAATACTTTAAGCTGATTTATGACATGAAGTTTGATATAACTTCTTCTGCTCGGGGCAGTGGTTGAAGGCTTTGACTTTG
AGGACATGTTCCTCTTAAGGTCTTGAGTTCGAGACTCACTTGTAACATTACTCTTTCGATGTGTTCGGTGCTGGCCTAAGGATGGATGTGATTGCCCTCCTTTAAAAAAA
AAAAAAGGAGTTAATGTAACTTTTTTGGCATGAAAATTGTTGTATCTATCCAGGATTCTTCAAATAGCAAGAATTAAGGACATCTGGATTGTTCTAGCTTTATTATGTGT
AATAAAAATTACAGGGTTTCAATTTCAC
Protein sequenceShow/hide protein sequence
MDPDAVAKAFVDHYYSTFDANRAGLANLYQDTSMLTFEGQKIQGAQNIVAKLTSLPFQQCQHSVSTIDSQPSGPNGGMLVFVSGNLQLAGEQHALKFSQMFHLMPTPQGS
FYVLNDIFRLNYA