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Sed0010324 (gene) of Chayote v1 genome

Gene IDSed0010324
OrganismSechium edule (Chayote v1)
Description28S ribosomal S34, mitochondrial
Genome locationLG01:6282456..6285307
RNA-Seq ExpressionSed0010324
SyntenySed0010324
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domainsIPR032053 - Mitochondrial 28S ribosomal protein S34


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605433.1 hypothetical protein SDJN03_02750, partial [Cucurbita argyrosperma subsp. sororia]7.9e-5573.42Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SL R+ ENE TTM N GE NP SAEVQ+S
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

XP_022947647.1 uncharacterized protein LOC111451448 [Cucurbita moschata]9.4e-5674.05Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SLPR+ ENE TTM N GE NP SAEVQ+S
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

XP_023007567.1 uncharacterized protein LOC111500023 [Cucurbita maxima]1.9e-5675.32Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SL R+SENE TTM N GE NP SAEVQTS
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

XP_023532313.1 uncharacterized protein LOC111794505 [Cucurbita pepo subsp. pepo]1.9e-5674.68Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SLPR+SENE TTM N GE NP SAE QTS
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

XP_038900676.1 uncharacterized protein LOC120087826 [Benincasa hispida]1.8e-5477.56Show/hide
Query:  VANRTAISRTLDLSRFSSTFFKNFSTSS---SPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGI
        VANRTAISR LD SR SSTF + FSTSS   S S  NA TA TK K ++KK+KNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAWGI
Subjt:  VANRTAISRTLDLSRFSSTFFKNFSTSS---SPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGI

Query:  AHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        AHKDGTPIAEAPKKISGVHKRCWKYI SLPR           SGE NP SAEVQTS
Subjt:  AHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

TrEMBL top hitse value%identityAlignment
A0A0A0KH76 Uncharacterized protein6.8e-5270.7Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG
        M+VANRTAISR LD SR SS+F + FS+SS S S+SN + +PT ++ K +KK+KNLFEVVQFLPNWGVGYHVAK+HWDEISYQITKINLYKSG HGKAWG
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        IAHK+GTPI EAPKKISGVHKRCWKYI SLP + E++            +SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

A0A5A7V0Y6 Uncharacterized protein9.8e-5168.79Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG
        M+VANRTAISR LD SR SS+F + F++SS S S+SN + +P+ ++ K +KK+KNLFEV+QFLPNWGVGYHVAK+HWDEISYQITKINLYKSG HGKAWG
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSASNADTAPTKTKPK-KKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        IAHK+G PI EAPKKISGVHKRCWKYI SLPR  E++            +SAEVQTS
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

A0A6J1FVV3 uncharacterized protein LOC1114489484.4e-5173.42Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSA--SNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        MSVANR+AIS  L  SR SS+F ++F+TSS SPS    NA TA TKTK ++KK+KNLFEVVQFLPNWGVGYHVAKAHWDEISYQITK+NLYKSG HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFSTSS-SPSA--SNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        G+AHKDGT IAEAPKKISGVHKRCWKYI SLPR           SG+ +P SAEVQTS
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

A0A6J1G714 uncharacterized protein LOC1114514484.5e-5674.05Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAK HWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SLPR+ ENE TTM N GE NP SAEVQ+S
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

A0A6J1KZ28 uncharacterized protein LOC1115000239.1e-5775.32Show/hide
Query:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW
        M+VANRT ISR LD SR +S+F +NFST   S+S S  +A  A +K K ++KK+KNLFEV+QFLPNWGVGYHVAKAHWDEISYQITKINLYK+G HGKAW
Subjt:  MSVANRTAISRTLDLSRFSSTFFKNFST---SSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAW

Query:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS
        GIAHK+G PIAEAPKKISGVHKRCWKYI SL R+SENE TTM N GE NP SAEVQTS
Subjt:  GIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G52370.1 unknown protein7.7e-4058.04Show/hide
Query:  MSVANRTAISR--TLDLSRFSSTFFKNFSTSSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG
        M++ NR AISR  T+   R S    +NFS + +    ++D+    +KPK++K+KNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKAWG
Subjt:  MSVANRTAISR--TLDLSRFSSTFFKNFSTSSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWG

Query:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMAN
        I HKDG   AEAPKKISGVHKRCWKYI +L + +   +TT A+
Subjt:  IAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENESTTMAN

AT5G58990.1 unknown protein9.1e-4158.87Show/hide
Query:  MSVANRTAISRTLDLSRF--SSTFFKNFSTSSSPSASNADTAPT--KTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKA
        M++ NR AISRT  +  F  S +  +NFS + S +++ A   P+    KPK++K+KNL EV QFLPNWG+GYH+AKAHW+ ISY+ITKINLYK G HGKA
Subjt:  MSVANRTAISRTLDLSRF--SSTFFKNFSTSSSPSASNADTAPT--KTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKA

Query:  WGIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENEST
        WGI HKDG   AEAPKKISGVHKRCWKYI +L + +   +T
Subjt:  WGIAHKDGTPIAEAPKKISGVHKRCWKYITSLPRASENEST


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCAGTCGCGAACAGAACTGCGATCAGTCGAACCCTAGACTTGTCGAGGTTTTCTTCTACCTTTTTCAAAAACTTCAGCACTTCTTCATCGCCGTCAGCCTCCAATGC
CGACACTGCTCCGACTAAAACCAAGCCCAAGAAGAAGAAGCGGAAGAATCTGTTCGAAGTGGTTCAGTTTTTGCCCAATTGGGGTGTAGGGTACCATGTCGCCAAGGCTC
ATTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCAATCATGGCAAGGCATGGGGCATCGCTCATAAAGATGGCACACCCATTGCAGAAGCT
CCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCACAAGCTTGCCAAGAGCATCAGAGAACGAATCGACCACAATGGCGAATTCGGGAGAAAGGAACCC
ATCATCAGCTGAAGTTCAAACTTCATGA
mRNA sequenceShow/hide mRNA sequence
GCAATTACACAAAAAAAAAAAAAATCTCCATTTTCACTTGCTTTCCTAAACCCTGGGTTGTAGAGGCAACGAAATAGCGAAACCAGAGAGAGAGAGAGAGAGAGAGAGAG
AGGCGCCAATGTCAGTCGCGAACAGAACTGCGATCAGTCGAACCCTAGACTTGTCGAGGTTTTCTTCTACCTTTTTCAAAAACTTCAGCACTTCTTCATCGCCGTCAGCC
TCCAATGCCGACACTGCTCCGACTAAAACCAAGCCCAAGAAGAAGAAGCGGAAGAATCTGTTCGAAGTGGTTCAGTTTTTGCCCAATTGGGGTGTAGGGTACCATGTCGC
CAAGGCTCATTGGGATGAAATTTCCTACCAGATCACCAAAATCAATCTCTACAAGAGTGGCAATCATGGCAAGGCATGGGGCATCGCTCATAAAGATGGCACACCCATTG
CAGAAGCTCCAAAGAAAATCAGCGGAGTTCACAAGCGCTGTTGGAAGTATATCACAAGCTTGCCAAGAGCATCAGAGAACGAATCGACCACAATGGCGAATTCGGGAGAA
AGGAACCCATCATCAGCTGAAGTTCAAACTTCATGATTGCAGAGGAATTGAAGTTGCTCTTTTTGGTCAACCATTCACAGAGTTCTATTCTCTTCAGATTAGCAGTCCTT
AAATGTTGTCAGGTTTCTTAAGTCCATTATATGAGGGGCATTCTGTGTTTCCTTGTCTCCGAGATAAAAGAAAGATCAATCATCCTGAACTAAGTGTACGTTGAATTGAT
TTTCTATTCTCAGTTACTAGTGGATTTTTATGTTAAACAAAGGTTGAAGAATCTAGTTGGTATTTGTGAATCTGTGTTTTTTTC
Protein sequenceShow/hide protein sequence
MSVANRTAISRTLDLSRFSSTFFKNFSTSSSPSASNADTAPTKTKPKKKKRKNLFEVVQFLPNWGVGYHVAKAHWDEISYQITKINLYKSGNHGKAWGIAHKDGTPIAEA
PKKISGVHKRCWKYITSLPRASENESTTMANSGERNPSSAEVQTS