; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010335 (gene) of Chayote v1 genome

Gene IDSed0010335
OrganismSechium edule (Chayote v1)
DescriptionNuclear polyadenylated RNA-binding protein 3-like
Genome locationLG05:35515035..35516035
RNA-Seq ExpressionSed0010335
SyntenySed0010335
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0033784.1 nuclear polyadenylated RNA-binding protein 3-like [Cucumis melo var. makuwa]1.3e-5366.84Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV
        ME++SG  SSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+ E   S D  V++DLRE MI+   AVPISLVE+RI DG L + 
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV

Query:  CLVRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
        C + NQ         +D E+E + D D+ DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  CLVRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

XP_008448068.1 PREDICTED: uncharacterized protein LOC103490356 [Cucumis melo]2.3e-5366.49Show/hide
Query:  SLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEVCL
        S S +SSSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+ E   S D  V++DLRE MI+   AVPISLVE+RI DG L + C 
Subjt:  SLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEVCL

Query:  VRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
        + NQ         +D E+E + D ++ DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  VRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

XP_011658549.2 uncharacterized protein LOC101212092 [Cucumis sativus]2.7e-5466.67Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV
        ME++SG+SSSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+    CS D  V++DLRE MI+   AVPISLVE+RI D  L + 
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV

Query:  CLVRNQ---------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
          + NQ          D E+E +  DD DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  CLVRNQ---------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

XP_023529313.1 NAD-dependent protein deacetylase HST1-like [Cucurbita pepo subsp. pepo]5.1e-5368.16Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE---EICSGDGGVAEDLREMMITSATAVPI-SLVEERIAD
        MESLS A+SSSS+SV+FVF +D EYEFVEE ERLSNWELLD SDADF +  NGD  EEEEE   E CS D  V +DLR   +    A+PI SLVEERI D
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE---EICSGDGGVAEDLREMMITSATAVPI-SLVEERIAD

Query:  GRLGEVCLVRNQ-ED---------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKH
        G   +V L++NQ ED          EDES     DD DDGDE DLDDELVPWSVSDKLGR+RMRKLGKRGF +MYNSKRSPFLFTK GCVRGKHGLGLKH
Subjt:  GRLGEVCLVRNQ-ED---------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKH

Query:  S
        S
Subjt:  S

XP_038886897.1 uncharacterized protein LOC120077100 [Benincasa hispida]2.3e-5366.84Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV
        ME++SG+SSSSS S  FVF +DFEYEFVE+ ERLSNWELLD  DAD  M+G+ G EE+ E CS D  V EDLREM+      VPISLVE+RI DG L ++
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV

Query:  CLVRNQ-------------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
          ++NQ             E+ E+E  DGDD DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  CLVRNQ-------------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

TrEMBL top hitse value%identityAlignment
A0A0A0K4F3 Uncharacterized protein1.3e-5466.67Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV
        ME++SG+SSSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+    CS D  V++DLRE MI+   AVPISLVE+RI D  L + 
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV

Query:  CLVRNQ---------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
          + NQ          D E+E +  DD DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  CLVRNQ---------EDREDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

A0A1S3BJG2 uncharacterized protein LOC1034903561.1e-5366.49Show/hide
Query:  SLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEVCL
        S S +SSSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+ E   S D  V++DLRE MI+   AVPISLVE+RI DG L + C 
Subjt:  SLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEVCL

Query:  VRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
        + NQ         +D E+E + D ++ DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  VRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

A0A5A7SRG7 Nuclear polyadenylated RNA-binding protein 3-like6.5e-5466.84Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV
        ME++SG  SSSS+S++FVF++DFEYEFVE+ ERLSNWELLD  DAD  M G+ GEE+ E   S D  V++DLRE MI+   AVPISLVE+RI DG L + 
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEV

Query:  CLVRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS
        C + NQ         +D E+E + D D+ DEFDLDDELVPWSVSDKLGR+RMRKLGKRGF KMYNSKRSPFLFTK GCVRGKHGLGLKHS
Subjt:  CLVRNQ---------EDREDESD-DGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHS

A0A6J1F1D0 NAD-dependent protein deacetylase HST1-like5.5e-5366.01Show/hide
Query:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE-----EICSGDGGVAEDLREMMITSATAVPI-SLVEERI
        ME+ SGA+SSSS+SV+FVF +D EYEFVEE ERLSNWELLD SDADF +  NGD  EEEEE     E CS D  V +DLR   +    A+PI SLVEERI
Subjt:  MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE-----EICSGDGGVAEDLREMMITSATAVPI-SLVEERI

Query:  ADGRLGEVCLVRNQED----------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGL
         DG   +V L++NQ +           EDES     DD DDGDE DLDDELVPWSVSDKLGR+RMRKLGKRGF +MYNSKRSPFLFTK GCVRGKHGLGL
Subjt:  ADGRLGEVCLVRNQED----------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGL

Query:  KHS
        KHS
Subjt:  KHS

A0A6J1I229 NAD-dependent protein deacetylase HST1-like1.6e-5267.98Show/hide
Query:  MESLSGA--SSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE---EICSGDGGVAEDLREMMITSATAVPI-SLVEERI
        ME+LSGA  SSSSS+SV+FVF +D EYEFVEE ERLSNWELLD SDADF +  NGD  EEEEE   E CS D  V +DLR   +    A+PI SLVEERI
Subjt:  MESLSGA--SSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGM--NGDRGEEEEE---EICSGDGGVAEDLREMMITSATAVPI-SLVEERI

Query:  ADGRLGEVCLVRNQ-ED---------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGL
         DG   +V L++NQ ED          EDES     DD DDGDE DLDDELVPWSVSDKLGR+RMRKLGKRGF +MYNSKRSPFLFTK GCVRGKHGLGL
Subjt:  ADGRLGEVCLVRNQ-ED---------REDES-----DDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGL

Query:  KHS
        KHS
Subjt:  KHS

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT4G34630.1 unknown protein1.2e-1563.77Show/hide
Query:  EDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLK
        +D  +D +  D +DLD+ELVP SVS K+GR+RMRKLGKR  AK+Y SK SPFL  K G VRGKHGLG+K
Subjt:  EDESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLK

AT5G48420.1 unknown protein2.7e-0442.86Show/hide
Query:  DESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFT--KAGCVRGKHGLGLK
        DE DD D  D+ D D ELV          +R+RK GKR F K    K+  + ++  K GCV GKHGL +K
Subjt:  DESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFT--KAGCVRGKHGLGLK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGAATCCCTCTCTGGAGCATCATCATCGTCTTCAACCTCCGTTCAATTCGTGTTCTTCAATGATTTTGAGTACGAATTCGTCGAAGAAGCCGAACGCCTTTCGAACTG
GGAGCTGCTCGATGTTTCCGATGCCGATTTCGGAATGAACGGAGATCGAGGCGAAGAAGAGGAAGAGGAAATTTGCAGCGGCGACGGCGGAGTTGCCGAGGATCTTCGAG
AGATGATGATTACTTCTGCTACGGCGGTGCCGATTTCTCTTGTGGAGGAACGGATCGCGGACGGTCGTTTAGGTGAGGTTTGTTTGGTTCGGAATCAGGAGGATCGAGAG
GATGAATCCGACGACGGTGACGATGGAGATGAGTTCGATTTGGACGACGAACTCGTTCCGTGGTCCGTGAGTGACAAGCTCGGACGGGAGAGGATGAGGAAATTGGGGAA
AAGAGGATTCGCGAAGATGTATAATTCCAAGAGATCGCCGTTTCTGTTCACCAAGGCTGGGTGCGTTCGCGGCAAGCACGGACTTGGCTTGAAGCACAGTGATTAG
mRNA sequenceShow/hide mRNA sequence
AAAAAAAAAAAACTGTAAATCAAACAAACAACCAACCCAAGAAGAAAAAATCCGATCGAAAATGGAATCCCTCTCTGGAGCATCATCATCGTCTTCAACCTCCGTTCAAT
TCGTGTTCTTCAATGATTTTGAGTACGAATTCGTCGAAGAAGCCGAACGCCTTTCGAACTGGGAGCTGCTCGATGTTTCCGATGCCGATTTCGGAATGAACGGAGATCGA
GGCGAAGAAGAGGAAGAGGAAATTTGCAGCGGCGACGGCGGAGTTGCCGAGGATCTTCGAGAGATGATGATTACTTCTGCTACGGCGGTGCCGATTTCTCTTGTGGAGGA
ACGGATCGCGGACGGTCGTTTAGGTGAGGTTTGTTTGGTTCGGAATCAGGAGGATCGAGAGGATGAATCCGACGACGGTGACGATGGAGATGAGTTCGATTTGGACGACG
AACTCGTTCCGTGGTCCGTGAGTGACAAGCTCGGACGGGAGAGGATGAGGAAATTGGGGAAAAGAGGATTCGCGAAGATGTATAATTCCAAGAGATCGCCGTTTCTGTTC
ACCAAGGCTGGGTGCGTTCGCGGCAAGCACGGACTTGGCTTGAAGCACAGTGATTAGAACAAGCTCGATTCAATTCAAGGTAACCGAATCTGATTCCAATTTCGCTTAGG
AGTAAATAGATGGAATAAAAAAAGAAGCAAAATCAAGAAGAAAGTAGGTAGCTAATCTGTGAATCGGATTTTGCTGTGATGGTTTTTCAAGGCCTGGATGGATCATGGAT
GAACATGAACATGAACACTAATTTTTCTCATCATTTTTGTGAATTAATCATCTGTATTCTTGGCTTGTTTGTGGTTCTTCATGTAATTTGTGTACCAAAAATTGTGGGAT
CTGGGCCACACACACCATGTGATCAATGAACAATTGACGATGATTTTGTATCATTTTTCAAGTTTTAGAGAAAGCCAGGCGTCTGGTTCTAAACTGATGAGGCGTCATTA
TCCTTTCTACA
Protein sequenceShow/hide protein sequence
MESLSGASSSSSTSVQFVFFNDFEYEFVEEAERLSNWELLDVSDADFGMNGDRGEEEEEEICSGDGGVAEDLREMMITSATAVPISLVEERIADGRLGEVCLVRNQEDRE
DESDDGDDGDEFDLDDELVPWSVSDKLGRERMRKLGKRGFAKMYNSKRSPFLFTKAGCVRGKHGLGLKHSD