; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010347 (gene) of Chayote v1 genome

Gene IDSed0010347
OrganismSechium edule (Chayote v1)
DescriptionDNA-directed RNA polymerases II, IV and V subunit 12
Genome locationLG04:36059875..36061960
RNA-Seq ExpressionSed0010347
SyntenySed0010347
Gene Ontology termsGO:0006351 - transcription, DNA-templated (biological process)
GO:0005665 - RNA polymerase II, core complex (cellular component)
GO:0005666 - RNA polymerase III complex (cellular component)
GO:0005736 - RNA polymerase I complex (cellular component)
GO:0003677 - DNA binding (molecular function)
GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
GO:0008270 - zinc ion binding (molecular function)
InterPro domainsIPR006591 - RNA polymerase archaeal subunit P/eukaryotic subunit RPABC4
IPR029040 - RNA polymerase subunit RPABC4/transcription elongation factor Spt4
IPR039747 - DNA-directed RNA polymerases I, II, and III subunit RPABC4


Homology Show/hide homology
GenBank top hitse value%identityAlignment
RZC92788.1 hypothetical protein C5167_029517 [Papaver somniferum]1.9e-2196.08Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRT+RIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_003534102.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Glycine max]8.5e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_014507408.2 DNA-directed RNA polymerases II, IV and V subunit 12 [Vigna radiata var. radiata]8.5e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_020244053.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Asparagus officinalis]1.4e-2196.08Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSY+CGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

XP_021658712.1 DNA-directed RNA polymerases II, IV and V subunit 12 [Hevea brasiliensis]1.1e-2196.08Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRI+QYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

TrEMBL top hitse value%identityAlignment
A0A1S3UMW8 DNA-directed RNA polymerases II, IV and V subunit 124.1e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A1U8AQX5 DNA-directed RNA polymerases II, IV and V subunit 124.1e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A2I4F5W9 DNA-directed RNA polymerases II, IV and V subunit 124.1e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

A0A6A5MJT3 Putative RNA polymerase archaeal subunit P/eukaryotic subunit RPABC44.1e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

C6T1P2 Uncharacterized protein4.1e-2298.04Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDPQPEPVSYICGDCGM+NTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

SwissProt top hitse value%identityAlignment
P48011 DNA-directed RNA polymerases I, II, and III subunit RPABC46.3e-1255.1Show/hide
Query:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+P  + Y+C DCG  NT++  +VI+CRECG+R++YK RT+R+VQ+EAR
Subjt:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

P53803 DNA-directed RNA polymerases I, II, and III subunit RPABC43.7e-1257.14Show/hide
Query:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q3ZBC0 DNA-directed RNA polymerases I, II, and III subunit RPABC43.7e-1257.14Show/hide
Query:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q63871 DNA-directed RNA polymerases I, II, and III subunit RPABC43.7e-1257.14Show/hide
Query:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        P+ +P+ YICG+C  +N +K  D I+CRECGYRI+YKKRT+R+V ++AR
Subjt:  PQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Q9FLM8 DNA-directed RNA polymerases II, IV and V subunit 126.7e-2286.27Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG +NTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR

Arabidopsis top hitse value%identityAlignment
AT1G53690.1 DNA directed RNA polymerase, 7 kDa subunit6.5e-1270.73Show/hide
Query:  DPQPEP-VSYICGDCGMDNTLKPGDVIQCRECGYRILYKKR
        D QPE  V Y+CGDCG +N LK GDV QCR+CG+RILYKKR
Subjt:  DPQPEP-VSYICGDCGMDNTLKPGDVIQCRECGYRILYKKR

AT5G41010.1 DNA directed RNA polymerase, 7 kDa subunit4.8e-2386.27Show/hide
Query:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR
        MDP PEPV+Y+CGDCG +NTLK GDVIQCRECGYRILYKKRTRR+VQYEAR
Subjt:  MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGATCCTCAACCTGAACCAGTGAGCTACATCTGTGGAGATTGTGGAATGGACAACACTCTGAAGCCGGGTGATGTTATACAGTGCCGAGAGTGTGGCTACCGTATCCT
CTACAAGAAGCGCACACGTCGCATTGTTCAGTATGAGGCCCGCTGA
mRNA sequenceShow/hide mRNA sequence
GCCTGTTTGAATCGGGTAAAACCCGAATGGATTAAATTTATATAAATAAGAATAAAAGAAGTAAACCCTACCCGGCAGCTTTCTCTCCCTCCCGCGCCATCGTTGCCGCA
ACCAAACGTACATTCTTCACCAGCAGCTAAGGTCGCCGTCGCCGTCGCCGATCGCCGGTTTCTGGCCTTCGACTCATGGATCCTCAACCTGAACCAGTGAGCTACATCTG
TGGAGATTGTGGAATGGACAACACTCTGAAGCCGGGTGATGTTATACAGTGCCGAGAGTGTGGCTACCGTATCCTCTACAAGAAGCGCACACGTCGCATTGTTCAGTATG
AGGCCCGCTGAAATGCTTATTCTGGTGATGGACTTTTAGTATCATGAAATATTTTGCGAGTCTCTTTTCGTTGCATTAAACTAAATGTAAGGATGATGGTAACTTCGTCA
TTTTCTAAGTGTTTTTAGGAAAACTAAACAAACATACAAACATTATGGTAATGCTGGCACTATATTTTCCTTTCAAATGCTATTATCCAAAAAAGAACCCGGAAGGTAAC
ATTTGCATTTCTATAGCAGCATTTGATTCGTATTCTTTTTTCAACAATTGTGGTGTTGGATGTCAAAATATTGAAATTTGTGATGGTC
Protein sequenceShow/hide protein sequence
MDPQPEPVSYICGDCGMDNTLKPGDVIQCRECGYRILYKKRTRRIVQYEAR