CuGenDBv2

Gene ID	Sed0010409
Organism	Sechium edule (Chayote v1)
Description	ATP-dependent RNA helicase dbp-8
Genome location	LG01:8892014..8892601
RNA-Seq Expression	Sed0010409
Synteny	Sed0010409
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

XP_008457323.1 PREDICTED: uncharacterized protein LOC103497044 [Cucumis melo]

2.3e-68

86.39

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNATLNSGIVFSEDI D SDSDTNSAEGSDYYEPISAID EESD A SEDETYSSD H H LPNGC VENAVSSL LNDDVERRCSD+EEEER  EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN
         IRMAFREDE RRNAPLSPEN TRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP   NS+ N
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN

XP_022964640.1 uncharacterized protein LOC111464656 [Cucurbita moschata]

1.7e-71

88.62

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNA+LNSG+VFSEDIAD SDSDTNSAEGSDYYEPISAID EESDEAGS+DE YSSD HLH LPNGC VENAVSSL+LNDDVERRCSDEEEEE   EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
         IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP S NNF
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

XP_022970483.1 uncharacterized protein LOC111469451 [Cucurbita maxima]

3.5e-72

89.22

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNA+LNSG+VFSEDIAD SDSDTNSAEGSDYYEPISAID EESDEAGS+DETYSSD HLH LPNGC VENAVSSL+LNDDVERRCSDEEEEE   EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
         IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP S NNF
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

XP_023520169.1 uncharacterized protein LOC111783470 [Cucurbita pepo subsp. pepo]

4.7e-69

87.5

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDE-AGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASD
        MNA+LNSG+VFSEDIAD SDSDTNSAEGSDYYEPIS ID EESDE AGS+DETYSSD HLH LPNG  VENAVSSL+LNDDVERRCSDEEEEE   EASD
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDE-AGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASD

Query:  SEIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
        S IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP S NNF
Subjt:  SEIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

XP_038894769.1 uncharacterized protein LOC120083197 [Benincasa hispida]

1.7e-71

88.62

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNATLNSGIVFSE+IAD SDSDTNSAEGSDYYEPISAID EESDEAGSE+ETYSSDPH H L NGC VENAVSSL+LNDDVERRCSD+EEEER  EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
         IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP+  NNF
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LXQ6 Uncharacterized protein

2.5e-68

86.39

Show/hide

Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNATLNSGIVF+EDIAD SDSDTNSAEGSDYYEPISAID EESD A SEDETYSSDPH H LPNGC VENAVSSL LNDDVERRCSD+EEEER   ASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN
         IRMAFREDE RRNAPLSPEN TRIMEAMRGISF GS PDWTRIVSEDRW DQLRRLRQTP   NSL N
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN

A0A1S3C5C0 uncharacterized protein LOC103497044

1.1e-68

86.39

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNATLNSGIVFSEDI D SDSDTNSAEGSDYYEPISAID EESD A SEDETYSSD H H LPNGC VENAVSSL LNDDVERRCSD+EEEER  EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN
         IRMAFREDE RRNAPLSPEN TRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP   NS+ N
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN

A0A5A7UY79 Uncharacterized protein

1.7e-61

85.26

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Query:  DIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDSEIRMAFREDEARR
        DI D SDSDTNSAEGSDYYEPISAID EESD A SEDETYSSD H H LPNGC VENAVSSL LNDDVERRCSD+EEEER  EASDS IRMAFREDE RR
Subjt:  DIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDSEIRMAFREDEARR

Query:  NAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN
        NAPLSPEN TRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP   NS+ N
Subjt:  NAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTP---NSLNN

A0A6J1HLE1 uncharacterized protein LOC111464656

8.3e-72

88.62

Show/hide

Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNA+LNSG+VFSEDIAD SDSDTNSAEGSDYYEPISAID EESDEAGS+DE YSSD HLH LPNGC VENAVSSL+LNDDVERRCSDEEEEE   EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
         IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP S NNF
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

A0A6J1I3Z1 uncharacterized protein LOC111469451

1.7e-72

89.22

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Query:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS
        MNA+LNSG+VFSEDIAD SDSDTNSAEGSDYYEPISAID EESDEAGS+DETYSSD HLH LPNGC VENAVSSL+LNDDVERRCSDEEEEE   EASDS
Subjt:  MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDS

Query:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF
         IRMAFREDE RRNAPLSPENATRIMEAMRGISFGGS PDWTRIVSEDRW DQLRRLRQTP S NNF
Subjt:  EIRMAFREDEARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G07020.1 unknown protein

1.9e-23

Show/hide

Query:  SDSDTNSAEGS-DYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENA---VSSLNLNDDVERRCSDEEEEERRTEASDSEIRMAFREDEARRN
        SDSD+NS E S DYYEPISA+D   S++   E+++Y       L    C + +A   +SS+++ND+       + EEE  TE +  EIR AF EDE RR 
Subjt:  SDSDTNSAEGS-DYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENA---VSSLNLNDDVERRCSDEEEEERRTEASDSEIRMAFREDEARRN

Query:  APLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQT
        +PL  ENA R+MEAMR ISF G+ PDW   V+EDRW DQLRRLR T
Subjt:  APLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQT

Sequences

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CDS sequence

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ATGAACGCAACGTTGAACTCTGGAATCGTTTTCTCTGAAGACATAGCCGACGAAAGTGATTCGGATACGAATTCCGCTGAAGGATCGGACTACTACGAGCCGATTTCAGC
CATTGACGATGAAGAATCCGACGAAGCTGGATCGGAGGACGAAACCTACAGCTCCGATCCTCATTTGCATCTTTTACCTAACGGCTGCCATGTAGAGAATGCAGTTTCGT
CTCTTAATCTGAACGATGATGTGGAGAGACGGTGCAGCGATGAGGAAGAGGAGGAGCGGAGGACAGAGGCTTCTGATTCGGAGATTAGAATGGCGTTTAGGGAGGATGAG
GCGCGAAGGAACGCGCCGCTGTCGCCGGAAAATGCAACGAGGATCATGGAGGCCATGCGCGGGATCTCGTTTGGCGGATCCGTTCCAGATTGGACTCGGATTGTTTCTGA
GGATCGTTGGAATGATCAGCTGCGAAGGCTCAGGCAAACGCCTAACTCTCTCAATAATTTCTGA

mRNA sequence

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Protein sequence

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MNATLNSGIVFSEDIADESDSDTNSAEGSDYYEPISAIDDEESDEAGSEDETYSSDPHLHLLPNGCHVENAVSSLNLNDDVERRCSDEEEEERRTEASDSEIRMAFREDE
ARRNAPLSPENATRIMEAMRGISFGGSVPDWTRIVSEDRWNDQLRRLRQTPNSLNNF

Sed0010409 (gene) of Chayote v1 genome