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Sed0010427 (gene) of Chayote v1 genome

Gene IDSed0010427
OrganismSechium edule (Chayote v1)
DescriptionChlororespiratory reduction 3
Genome locationLG04:41405152..41408757
RNA-Seq ExpressionSed0010427
SyntenySed0010427
Gene Ontology termsGO:0009773 - photosynthetic electron transport in photosystem I (biological process)
GO:0009535 - chloroplast thylakoid membrane (cellular component)
GO:0010598 - NAD(P)H dehydrogenase complex (plastoquinone) (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR038931 - Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6600832.1 putative NAD(P)H dehydrogenase subunit CRR3, chloroplastic, partial [Cucurbita argyrosperma subsp. sororia]4.8e-5270.81Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM
        +CFS IS+TKNVA+ASLNP+D SHS P         IP  N R RRR    +RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG+LM
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM

Query:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        KKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

XP_022942899.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita moschata]4.8e-5270.81Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM
        +CFS IS+TKNVA+ASLNP+D SHS P         IP  N R RRR    +RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG+LM
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM

Query:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        KKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

XP_022985001.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita maxima]6.3e-5269.51Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRRQ-------RPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEG
        +CF  IS+TKNVA+ASLNP+D SHS P         IP NN + RRRQ       RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRRQ-------RPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEG

Query:  SLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        +LMKKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  SLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

XP_023511915.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Cucurbita pepo subsp. pepo]1.8e-5170.19Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM
        +CF  IS+TKNVA+ASLNP+D SHS P         IP  N R RRR    +RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG+LM
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM

Query:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        KKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

XP_038893324.1 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic [Benincasa hispida]1.2e-5070.12Show/hide
Query:  MASCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGS
        MAS F SISLTKNV +ASLNP D SHS P         IP NN R RRR    +RPSVIEIERAIGGGRFRDADPRDLEED+K+AF+M  +SF+ KYEG 
Subjt:  MASCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGS

Query:  LMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
        +MKKLRETGEW+T+Q+E+KF+ASGK FL+ TFQWVLPIW  S LVASG+IKLPFN+PFL++LLM
Subjt:  LMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM

TrEMBL top hitse value%identityAlignment
A0A0A0KJA3 Uncharacterized protein6.6e-4766.27Show/hide
Query:  MASCFSSISLTKNVAMASLNPTDKSHSKPDTV-------PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYE
        MAS F SIS TKNVA ASLNP   SHS    +        IP NN R RR+     RPS+IEIERAIGGGRFRDADPR+LEEDKK+AF+M  +SF+ KYE
Subjt:  MASCFSSISLTKNVAMASLNPTDKSHSKPDTV-------PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYE

Query:  GSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
          LMKKLRETGEW+T+Q+E+KF+ASGK FL+ TFQWVLPIW  S LVASG+IKLPF++PFL++LLM
Subjt:  GSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM

A0A1S3CM65 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic isoform X16.3e-5067.86Show/hide
Query:  MASCFSSISLTKNVAMASLNPTDKSHS-----------KPDTVPIPTNNQRPR--RRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTK
        MAS F SIS+TKNVA+ASLNP   SHS             DT+PI T   RP+    +RPSVIEIERAIGGGRFRDADPRDLEEDKK+AF+M  +SF+ K
Subjt:  MASCFSSISLTKNVAMASLNPTDKSHS-----------KPDTVPIPTNNQRPR--RRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTK

Query:  YEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
        YEG LMKKLRETGEW+T+Q+E+KF+ASGK FL+ TFQWVLPIW  S LVASG+IKLPFN+PFL++LLM
Subjt:  YEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM

A0A6J1DQ49 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic4.5e-4867.92Show/hide
Query:  FSSISLTKNVAMASLNPTDKSHS---KP----DTVPIPTN-NQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLMKKL
        FS IS+TKNVA+ASLN +D SHS   KP    DT+PI  + ++R  + +RPSVIEIERAIG GRFRDADPRDLEED+K+ F+M  LSF+ KYEG LMKKL
Subjt:  FSSISLTKNVAMASLNPTDKSHS---KP----DTVPIPTN-NQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLMKKL

Query:  RETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
        RETGEW+T+Q+E+KF+ASGK FL+ TFQW+LPIW  S LVASG+IKLPF++PFLD+LLM
Subjt:  RETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM

A0A6J1FSN9 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic2.3e-5270.81Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM
        +CFS IS+TKNVA+ASLNP+D SHS P         IP  N R RRR    +RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG+LM
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRR----QRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLM

Query:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        KKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  KKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

A0A6J1J6W0 probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic3.0e-5269.51Show/hide
Query:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRRQ-------RPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEG
        +CF  IS+TKNVA+ASLNP+D SHS P         IP NN + RRRQ       RPSVIEIERAIG GRFRDADPRDLEED+K+AF+M  +SF+ KYEG
Subjt:  SCFSSISLTKNVAMASLNPTDKSHSKPDTV-----PIPTNNQRPRRRQ-------RPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEG

Query:  SLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL
        +LMKKLRETGEW+T Q+E+KF+ASGK FL+ TFQWVLPIW FS LVASG+IKLPFN+PFLDQLL
Subjt:  SLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLL

SwissProt top hitse value%identityAlignment
Q9ZVE7 Probable NAD(P)H dehydrogenase subunit CRR3, chloroplastic6.4e-2339.88Show/hide
Query:  SCFSSISLTKNVAMASL---NPTDKSHSKPDTVPIPT-----------------NNQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSL
        S   SI+      MASL   +P+    S P  +P PT                 +  + RR  +PS+ +IERA G G +RD++    E D  + F+   L
Subjt:  SCFSSISLTKNVAMASL---NPTDKSHSKPDTVPIPT-----------------NNQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSL

Query:  SFSTKYEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
          + K+E  + KKLRE GE    ++E K R+SGK  LM T QW+LPIW+ S LVA G+IKLPF+ PFLD L+M
Subjt:  SFSTKYEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM

Arabidopsis top hitse value%identityAlignment
AT2G01590.1 chlororespiratory reduction 34.5e-2439.88Show/hide
Query:  SCFSSISLTKNVAMASL---NPTDKSHSKPDTVPIPT-----------------NNQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSL
        S   SI+      MASL   +P+    S P  +P PT                 +  + RR  +PS+ +IERA G G +RD++    E D  + F+   L
Subjt:  SCFSSISLTKNVAMASL---NPTDKSHSKPDTVPIPT-----------------NNQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSL

Query:  SFSTKYEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM
          + K+E  + KKLRE GE    ++E K R+SGK  LM T QW+LPIW+ S LVA G+IKLPF+ PFLD L+M
Subjt:  SFSTKYEGSLMKKLRETGEWLTHQSESKFRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTCTTGCTTCTCCTCCATTTCTCTCACAAAAAATGTGGCCATGGCCTCACTCAATCCCACCGACAAATCTCACTCCAAACCCGACACCGTTCCGATTCCGACCAA
CAATCAACGCCCACGGCGGCGGCAGCGGCCCTCCGTTATTGAAATCGAGCGTGCCATTGGCGGCGGAAGGTTCAGAGACGCCGACCCCAGGGATTTGGAAGAAGATAAGA
AGAGCGCATTTGAGATGGGTTCGCTGAGTTTTAGTACAAAATATGAAGGGTCGCTCATGAAAAAGCTTCGTGAGACAGGGGAATGGCTTACTCATCAATCTGAATCCAAA
TTTCGAGCTTCTGGAAAATTGTTTCTGATGATTACATTTCAATGGGTTCTACCAATTTGGGTATTCTCATTCCTTGTGGCTTCTGGGCTCATTAAGCTACCATTCAACTC
TCCATTTCTTGATCAACTTCTCATGTAA
mRNA sequenceShow/hide mRNA sequence
GTTTATTTGAAGTAAAAAAAAAAAATCCATGAACGGATAATAAGATAATAGATGGAGAGAACCCAAAATCGCAGAAAGTAAACAACCATGGCTTCTTGCTTCTCCTCCAT
TTCTCTCACAAAAAATGTGGCCATGGCCTCACTCAATCCCACCGACAAATCTCACTCCAAACCCGACACCGTTCCGATTCCGACCAACAATCAACGCCCACGGCGGCGGC
AGCGGCCCTCCGTTATTGAAATCGAGCGTGCCATTGGCGGCGGAAGGTTCAGAGACGCCGACCCCAGGGATTTGGAAGAAGATAAGAAGAGCGCATTTGAGATGGGTTCG
CTGAGTTTTAGTACAAAATATGAAGGGTCGCTCATGAAAAAGCTTCGTGAGACAGGGGAATGGCTTACTCATCAATCTGAATCCAAATTTCGAGCTTCTGGAAAATTGTT
TCTGATGATTACATTTCAATGGGTTCTACCAATTTGGGTATTCTCATTCCTTGTGGCTTCTGGGCTCATTAAGCTACCATTCAACTCTCCATTTCTTGATCAACTTCTCA
TGTAATAAGGTGCTATAAACTATTTGACCCAACAATAATTAGATTAAAAAGACAGATTTAAATCCAACACCTCTAGATGTTGCTGAGCTAAAAAGACGTGAATTTGCCAA
GTGATCGACTAGAGCCATACAAATAAAAAGTACCGATTCCAAGGTGTGGCGCAGTGGTGACTTGGGTTTTGAGGGTATGCTTCCCTCAAGGTCCCGAGTTCAAGACTCAC
CTATAACATTACTCTTTTAATGTCTATGGTGTCTGGCTTAGGGATGGGTGTGGTTACCTTGTTTCAAAAAAAAAAAAAATTAAAGGGAATTTATCATCAACAGCAAATTT
TATCTTTTGTATTACATTT
Protein sequenceShow/hide protein sequence
MASCFSSISLTKNVAMASLNPTDKSHSKPDTVPIPTNNQRPRRRQRPSVIEIERAIGGGRFRDADPRDLEEDKKSAFEMGSLSFSTKYEGSLMKKLRETGEWLTHQSESK
FRASGKLFLMITFQWVLPIWVFSFLVASGLIKLPFNSPFLDQLLM