; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010430 (gene) of Chayote v1 genome

Gene IDSed0010430
OrganismSechium edule (Chayote v1)
DescriptionTFIIIC_sub6 domain-containing protein
Genome locationLG12:4996373..4999147
RNA-Seq ExpressionSed0010430
SyntenySed0010430
Gene Ontology termsGO:0006383 - transcription by RNA polymerase III (biological process)
GO:0000127 - transcription factor TFIIIC complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR019481 - Transcription factor TFIIIC, triple barrel domain
IPR042771 - TFIIIC subunit GTF3C6-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6578370.1 hypothetical protein SDJN03_22818, partial [Cucurbita argyrosperma subsp. sororia]3.8e-4270.29Show/hide
Query:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP
        VRNMEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTM+P+LTICDKIK++GEYEETIGTCL F EEEV MVEEEA  SKTNR + +  EP
Subjt:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP

Query:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT
          A RK+LKP+A+VHKILKFKLL      DS+VP+ST+
Subjt:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT

XP_022939121.1 uncharacterized protein LOC111445121, partial [Cucurbita moschata]6.9e-4471.01Show/hide
Query:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP
        VRNMEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEV MVEEEA  S+TNR + +  EP
Subjt:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP

Query:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT
          APR++LKP+A+VHKILKFKLL     +DS+VP+ST+
Subjt:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT

XP_022993830.1 uncharacterized protein LOC111489725 [Cucurbita maxima]2.6e-4373.48Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEV MVEEEA  SKTNR + +  EP  A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLL--LDSSVPNSTT
        PRK+LKP+A+VHKILKFKLL  +DS+VP+ST+
Subjt:  PRKELKPIAAVHKILKFKLL--LDSSVPNSTT

XP_023550663.1 uncharacterized protein LOC111808744 isoform X1 [Cucurbita pepo subsp. pepo]7.7e-4371.85Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS S+GE EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEV MVEEEA  S+TNR + +  EP  A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLL-----LDSSVPNSTT
        PRK+LKP+A+VHKILKFKLL     +DS+VP+ST+
Subjt:  PRKELKPIAAVHKILKFKLL-----LDSSVPNSTT

XP_038885696.1 uncharacterized protein LOC120075999 [Benincasa hispida]1.2e-4376.56Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS  + E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEVP+VEEEA  S++NR + E AEPK A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLLLDSSVPNS
        PRKELKP+A+VHKILKFK LLDS+VPNS
Subjt:  PRKELKPIAAVHKILKFKLLLDSSVPNS

TrEMBL top hitse value%identityAlignment
A0A0A0LML8 TFIIIC_sub6 domain-containing protein4.3e-3971.88Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS S+ E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDK K++GEYEETIGTCLTF EEEVP+VEEEA+ S+T R + E  EP+ A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLLLDSSVPNS
         +KELK +A VHKILKFK LLDS VP+S
Subjt:  PRKELKPIAAVHKILKFKLLLDSSVPNS

A0A1S4DTV8 general transcription factor 3C polypeptide 6-like5.9e-4174.8Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS SN E EE+VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDK K++GEYEETIGTCLTF EEEVP+VEEEA+ S+TN  + E AEPK A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLLLDSSVPN
         RKELK  A VHKILKFK LLDS VP+
Subjt:  PRKELKPIAAVHKILKFKLLLDSSVPN

A0A6J1BZW5 uncharacterized protein LOC1110062257.0e-4274.24Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMV--EEEARLSKTNRPAAETAEPK
        MEKT +D  S+GE E++VLLDLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK+VGEYEETIGTCLTF EEEV +V  EEEA  S+T    AE   P 
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMV--EEEARLSKTNRPAAETAEPK

Query:  PAPRKELKPIAAVHKILKFKLLLDSSVPNSTT
         APRKELKPIA+VHKILKFKLL DS+VPNST+
Subjt:  PAPRKELKPIAAVHKILKFKLLLDSSVPNSTT

A0A6J1FF13 uncharacterized protein LOC1114451213.4e-4471.01Show/hide
Query:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP
        VRNMEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEV MVEEEA  S+TNR + +  EP
Subjt:  VRNMEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEP

Query:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT
          APR++LKP+A+VHKILKFKLL     +DS+VP+ST+
Subjt:  KPAPRKELKPIAAVHKILKFKLL-----LDSSVPNSTT

A0A6J1JTZ1 uncharacterized protein LOC1114897251.3e-4373.48Show/hide
Query:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA
        MEK  +DS S+GE EE+VL+DLGDVSLL+IPPNAP+VLS LDTMNP+LTICDKIK++GEYEETIGTCLTF EEEV MVEEEA  SKTNR + +  EP  A
Subjt:  MEKTRVDSPSNGEDEEFVLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPA

Query:  PRKELKPIAAVHKILKFKLL--LDSSVPNSTT
        PRK+LKP+A+VHKILKFKLL  +DS+VP+ST+
Subjt:  PRKELKPIAAVHKILKFKLL--LDSSVPNSTT

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G80745.1 Transcription factor TFIIIC, tau55-related protein7.2e-1542.06Show/hide
Query:  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVH
        ++E V++DL DVS  ++IP +AP+ LS LDT+NP+LTI  K+KLVGEY  TIGTCL F ++                      + +   +K ++P+A +H
Subjt:  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL

AT3G15420.1 Transcription factor TFIIIC, tau55-related protein3.1e-1849.53Show/hide
Query:  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVH
        +EEFV++DL +VS  + IP +AP+ LS LDT+NP+LTI  KIKLVGEY ETIGTCL F E      +EE   S+   P           +K ++P+A +H
Subjt:  DEEFVLLDLGDVSL-LNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVH

Query:  KILKFKL
        KILKF+L
Subjt:  KILKFKL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATTCAAATATCAGTGGTAAAATTCATTGGGTTCTTCTTCTTTACGCCGCGATTCACCGCCTGCAAATCCGAAGCTGCGTGGTCTCACCGGCTTCGCTTTTCCGGCCA
GATCCGTCCGGGAACCACCCCTTCGCCTATTCTCTGGCCAGATCTAACCTCTTTCTCGCTTCGATTTTGTAGAATTGAAACTTTGTCTGTTGTTTATTCAACCGGAGCTT
CACGCACGGCCTCGAAACACCCACCGGCGGGTCACCGCCGCCACCGCCGCGTTCGGAACATGGAGAAAACTAGAGTTGATTCTCCTTCTAATGGCGAGGACGAAGAATTT
GTATTGCTCGATCTTGGTGATGTATCGCTACTTAACATTCCACCCAATGCCCCATTTGTTCTATCTGATTTGGACACCATGAATCCACTGTTGACTATATGTGATAAAAT
TAAGTTGGTGGGAGAATATGAAGAAACAATTGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCCCCATGGTTGAAGAAGAAGCTAGACTGTCTAAAACAAATCGTCCCG
CTGCCGAAACAGCCGAACCAAAACCTGCTCCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACATAAGATTCTCAAATTTAAATTGTTGCTTGATTCTTCTGTTCCAAAC
TCTACAACTTAG
mRNA sequenceShow/hide mRNA sequence
TTAAAAATGATTCAAATATCAGTGGTAAAATTCATTGGGTTCTTCTTCTTTACGCCGCGATTCACCGCCTGCAAATCCGAAGCTGCGTGGTCTCACCGGCTTCGCTTTTC
CGGCCAGATCCGTCCGGGAACCACCCCTTCGCCTATTCTCTGGCCAGATCTAACCTCTTTCTCGCTTCGATTTTGTAGAATTGAAACTTTGTCTGTTGTTTATTCAACCG
GAGCTTCACGCACGGCCTCGAAACACCCACCGGCGGGTCACCGCCGCCACCGCCGCGTTCGGAACATGGAGAAAACTAGAGTTGATTCTCCTTCTAATGGCGAGGACGAA
GAATTTGTATTGCTCGATCTTGGTGATGTATCGCTACTTAACATTCCACCCAATGCCCCATTTGTTCTATCTGATTTGGACACCATGAATCCACTGTTGACTATATGTGA
TAAAATTAAGTTGGTGGGAGAATATGAAGAAACAATTGGCACATGTCTTACCTTTGGGGAAGAGGAAGTCCCCATGGTTGAAGAAGAAGCTAGACTGTCTAAAACAAATC
GTCCCGCTGCCGAAACAGCCGAACCAAAACCTGCTCCAAGGAAGGAGTTGAAACCCATTGCTGCAGTACATAAGATTCTCAAATTTAAATTGTTGCTTGATTCTTCTGTT
CCAAACTCTACAACTTAGGACACTAAAGAGCTCATATGTTATTTGTATATATACTTTGGGTTGGTCAGATAAAAAGAAGAAATTTTGGTTAGATTGAGTTAATAGTTTTA
TCAAATAGTTAGAGTTGCAAGCTTCGCTCATTTCTCTAATGCTTGGCTTAGGGACGGGCATGACTACCTTGTTTCAGGAAAAAAAAAAAATAGATAGAGTTGCAAGTGCA
GAAAACTTAAAATGTTAGATGCATTATATATTCGTATCGTTCAAAATGTTGTACTTGGAATAACTTTTGAAATGATGAATACTGCTTTTAGTTTTA
Protein sequenceShow/hide protein sequence
MIQISVVKFIGFFFFTPRFTACKSEAAWSHRLRFSGQIRPGTTPSPILWPDLTSFSLRFCRIETLSVVYSTGASRTASKHPPAGHRRHRRVRNMEKTRVDSPSNGEDEEF
VLLDLGDVSLLNIPPNAPFVLSDLDTMNPLLTICDKIKLVGEYEETIGTCLTFGEEEVPMVEEEARLSKTNRPAAETAEPKPAPRKELKPIAAVHKILKFKLLLDSSVPN
STT