; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010455 (gene) of Chayote v1 genome

Gene IDSed0010455
OrganismSechium edule (Chayote v1)
Descriptionarabinogalactan protein 31
Genome locationLG04:11892197..11896824
RNA-Seq ExpressionSed0010455
SyntenySed0010455
Gene Ontology termsNA
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG0558437.1 hypothetical protein KC19_10G028200 [Ceratodon purpureus]7.9e-0440.91Show/hide
Query:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLP--TLPPIEIEPPYIPPISPP---PKIKLPHI--PPIYLP------TLPPIEIEPP
        PP V  P PP  + + P+++PP+  P LPP+    PPL+P + LP  TLPP+ + P  +PPI PP   P + LP +  PP+ LP      TLPP+ + P 
Subjt:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLP--TLPPIEIEPPYIPPISPP---PKIKLPHI--PPIYLP------TLPPIEIEPP

Query:  YIPPISPPPV
         +PP++ PP+
Subjt:  YIPPISPPPV
KAG0558440.1 hypothetical protein KC19_10G028500 [Ceratodon purpureus]7.9e-0440.91Show/hide
Query:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLP--TLPPIEIEPPYIPPISPP---PKIKLPHI--PPIYLP------TLPPIEIEPP
        PP V  P PP  + + P+++PP+  P LPP+    PPL+P + LP  TLPP+ + P  +PPI PP   P + LP +  PP+ LP      TLPP+ + P 
Subjt:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLP--TLPPIEIEPPYIPPISPP---PKIKLPHI--PPIYLP------TLPPIEIEPP

Query:  YIPPISPPPV
         +PP++ PP+
Subjt:  YIPPISPPPV
MBP7492944.1 cadherin-like domain-containing protein [Rhodoferax sp.]7.2e-0537.38Show/hide
Query:  MVNKIHPPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPY
        ++  + PP V P  PP+V  ++P ++PP+  P +PP+   +PP++P +  P +PP+   +EPP +PP+ PP  P +  P +PP+  P  PP+   +EPP 
Subjt:  MVNKIHPPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPY

Query:  IPPISPP
        +PP+ PP
Subjt:  IPPISPP
MWV48015.1 DUF3494 domain-containing protein [Rathayibacter sp. VKM Ac-2803]3.6e-0440.59Show/hide
Query:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPYIPPISP
        PP   P  PP++  + P +IPP+  P +PP+I   PP+IP +  P +PP+   + PP IPP+ PP  P +  P  PP+  P +PP+   + PP IPP++P
Subjt:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPYIPPISP

Query:  P
        P
Subjt:  P
XP_038888460.1 vegetative cell wall protein gp1-like [Benincasa hispida]3.8e-0652.29Show/hide
Query:  PPHVFPPLPPLV----IEIKPLLIPPICLPALPPI----IKMKPPLIPSICLPTLPPIEIEPPYIPPISPPPKIKLPHIPPIYLPTLPPIEIEPPYIPPI
        PP   PPLPPL     I + PL  PPI LP LPPI    I++ P  +P I LP LPPI + P  IPP++P P I+LP +PPI LP LPPI I PP IP  
Subjt:  PPHVFPPLPPLV----IEIKPLLIPPICLPALPPI----IKMKPPLIPSICLPTLPPIEIEPPYIPPISPPPKIKLPHIPPIYLPTLPPIEIEPPYIPPI

Query:  SPPPVCGET
         PPP   +T
Subjt:  SPPPVCGET
TrEMBL top hitse value%identityAlignment
A0A7K1VHR7 DUF3494 domain-containing protein1.7e-0440.59Show/hide
Query:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPYIPPISP
        PP   P  PP++  + P +IPP+  P +PP+I   PP+IP +  P +PP+   + PP IPP+ PP  P +  P  PP+  P +PP+   + PP IPP++P
Subjt:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPI--EIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPI--EIEPPYIPPISP

Query:  P
        P
Subjt:  P
A0A7X9Z6C4 Chaplin6.5e-0440.57Show/hide
Query:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIEIEPPYIPPISPPPVC
        PP V P  PP V    P  +PP   P +PP+    PP +P    PT+PP  + PP +PP++PP  P +  P +PP+  PT+PP  + PP +PP++PP V 
Subjt:  PPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIEIEPPYIPPISPPPVC

Query:  GETNLT
          T +T
Subjt:  GETNLT
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G28290.1 arabinogalactan protein 312.9e-0439.6Show/hide
Query:  IHPPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIE--IEPPYIPPISP
        ++PP   P  PP    +KP + PP   P  PP    KPP+ P +  PT  P  ++PP  PP+ PP  P  K P  PP+Y PT  P++  + PP  PP++P
Subjt:  IHPPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIE--IEPPYIPPISP

Query:  P
        P
Subjt:  P
AT1G28290.2 arabinogalactan protein 313.8e-0441.58Show/hide
Query:  HPPHVFP-PLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIE--IEPPYIPPISP
        H PH  P P PP    +KP +  P+  PA PP+   KPP+ P    P  PP   +PP  PP+SPP  P +K P  PP   P  PP +  ++PP  PP  P
Subjt:  HPPHVFP-PLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPP--PKIKLPHIPPIYLPTLPPIE--IEPPYIPPISP

Query:  P
        P
Subjt:  P

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGAACAAAATACATCCTCCACACGTTTTTCCTCCCCTTCCTCCTCTTGTTATAGAGATTAAACCTCTTCTTATTCCTCCCATTTGTCTTCCTGCACTTCCTCCAAT
TATAAAGATGAAACCTCCTCTCATTCCCTCTATTTGTCTTCCTACACTTCCTCCAATTGAGATTGAACCTCCTTATATTCCTCCCATTTCTCCTCCTCCGAAGATCAAAC
TTCCTCACATTCCTCCCATTTATCTTCCTACACTTCCTCCAATTGAGATTGAACCTCCTTATATTCCTCCCATTTCTCCTCCTCCTGTTTGTGGAGAAACAAATTTGACC
TCAAATTCTTGA
mRNA sequenceShow/hide mRNA sequence
GAAGATGGTGAACAAAATACATCCTCCACACGTTTTTCCTCCCCTTCCTCCTCTTGTTATAGAGATTAAACCTCTTCTTATTCCTCCCATTTGTCTTCCTGCACTTCCTC
CAATTATAAAGATGAAACCTCCTCTCATTCCCTCTATTTGTCTTCCTACACTTCCTCCAATTGAGATTGAACCTCCTTATATTCCTCCCATTTCTCCTCCTCCGAAGATC
AAACTTCCTCACATTCCTCCCATTTATCTTCCTACACTTCCTCCAATTGAGATTGAACCTCCTTATATTCCTCCCATTTCTCCTCCTCCTGTTTGTGGAGAAACAAATTT
GACCTCAAATTCTTGATGTTATACTCGATATCTCTACCGTGATCATTATGTCAAAGTACACCCAATAACATATGGATCACAAGTGATTGTAATGGGTTAGAGTGTGCATG
AGAGAGTGTATGTATATATTAGAGTTATATGCAGGATGTATGCTTACATATAACTTAAATTAATGAAATAAAGATATTCATC
Protein sequenceShow/hide protein sequence
MVNKIHPPHVFPPLPPLVIEIKPLLIPPICLPALPPIIKMKPPLIPSICLPTLPPIEIEPPYIPPISPPPKIKLPHIPPIYLPTLPPIEIEPPYIPPISPPPVCGETNLT
SNS