CuGenDBv2

Gene ID	Sed0010485
Organism	Sechium edule (Chayote v1)
Description	D-ribose-binding periplasmic protein
Genome location	LG08:38044723..38045604
RNA-Seq Expression	Sed0010485
Synteny	Sed0010485
Gene Ontology terms	NA
InterPro domains	IPR025322 - Protein of unknown function DUF4228, plant

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7012230.1 hypothetical protein SDJN02_24982, partial [Cucurbita argyrosperma subsp. argyrosperma]

8.3e-55

73.56

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAVD ASLIIQHPTGK DRL+ PV AGEIM +NPGHYVALLIST+ICSSET+  H RRR  H QTNS NSNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS
         TQDVLQG KAKQ AK+KK+ LDFEG         E + N +MK+E+NR     S+ KSRGWQPSLQSISE GS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

XP_004152463.1 uncharacterized protein LOC101220404 [Cucumis sativus]

1.1e-59

76.4

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTK+C SETT+TH RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG KAKQ AK K++ L+FE        G E EIN  MKNE+NRVKK NST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

XP_008438114.1 PREDICTED: uncharacterized protein LOC103483316 [Cucumis melo]

3.0e-60

76.97

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTK+C SETT+TH RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG KAKQ AK K++ LDFE        G E EIN  MKNE+NRVKK NST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

XP_022994673.1 uncharacterized protein LOC111490314 [Cucurbita maxima]

6.4e-55

73.56

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAVDTASLIIQHP GK DRL+ PV AGEIM +NPGHYVALLIST+ICSSET+  H RRR  H Q NS NSNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS
         TQDVLQG KAKQ AK+KK+ LDFEG         E + N +MK+E+NR     S+ KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

XP_038894996.1 uncharacterized protein LOC120083345 [Benincasa hispida]

1.3e-55

77.06

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRH--TQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTKICSSETTA H RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRH--TQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG K KQ AK KK      G E EI+  MK E+N VKK +ST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LU27 Uncharacterized protein

5.4e-60

76.4

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTK+C SETT+TH RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG KAKQ AK K++ L+FE        G E EIN  MKNE+NRVKK NST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

A0A1S3AV95 uncharacterized protein LOC103483316

1.4e-60

76.97

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTK+C SETT+TH RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG KAKQ AK K++ LDFE        G E EIN  MKNE+NRVKK NST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

A0A5D3BH89 Uncharacterized protein

1.4e-60

76.97

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQA+DTASLIIQHP GK DRL+ PV AGEIM TNPGHYVALLISTK+C SETT+TH RRR   TQTNS N NSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS
        TTQDVLQG KAKQ AK K++ LDFE        G E EIN  MKNE+NRVKK NST     KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFE--------GPEREINHVMKNEKNRVKKWNST----GKSRGWQPSLQSISEGGS

A0A6J1GTT7 uncharacterized protein LOC111457051

1.5e-54

72.99

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAVD ASLIIQHP GK DRL+ PV AGEIM +NPGHYVALLIST+ICSSET+  H RRR  H QTNS NSNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS
         TQDVLQG KAKQ AK+KK+ LDFEG         E + N +MK+E+NR     S+ KSRGWQPSLQSISE GS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

A0A6J1K5T5 uncharacterized protein LOC111490314

3.1e-55

73.56

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV
        MGNCQAVDTASLIIQHP GK DRL+ PV AGEIM +NPGHYVALLIST+ICSSET+  H RRR  H Q NS NSNSVRLTRIKLLKPTDSLVLGQIYRLV
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRR--HTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLV

Query:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS
         TQDVLQG KAKQ AK+KK+ LDFEG         E + N +MK+E+NR     S+ KSRGWQPSLQSISEGGS
Subjt:  TTQDVLQGFKAKQ-AKLKKSSLDFEG--------PEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G10530.1 unknown protein

9.0e-23

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT
        MGNCQAV+ A L++QHP G  DR +  V+  E+M   PGHYV+L+I      SE    +        +     +VR TR++LL+PT++LVLG  YRL+T+
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT

Query:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNEKNRVKKW----NSTG--KSRGWQPSLQSISEGGS
        Q+V++  + K+ AK KK  ++     ++ +     EK + K++    NST   KS+ W+PSLQSISE  S
Subjt:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNEKNRVKKW----NSTG--KSRGWQPSLQSISEGGS

AT1G60010.1 unknown protein

6.0e-27

42.46

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT
        MGNCQAVD A+L++QHP GK DR + PV+  EIM   PGHYV+L+I     +   T T      T  +      VR TR+KLL+PT++LVLG  YRL+T+
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT

Query:  QDVLQGFKAKQ-AKLKKSSLDF--------------EGPEREINHVMKNEKNRVKKWNS-TGKSRGWQPSLQSISEGGS
        Q+V++  +AK+ AK KK   +               E  ++  N   K+EK R    NS + +S+ W+PSLQSISE  S
Subjt:  QDVLQGFKAKQ-AKLKKSSLDF--------------EGPEREINHVMKNEKNRVKKWNS-TGKSRGWQPSLQSISEGGS

AT5G50090.1 unknown protein

4.0e-31

47.95

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT
        MGNCQAVDTA ++IQHP GK ++L  PV+A  +M  NPGH V+LLIST   SS              +S +   +RLTRIKLL+PTD+LVLG +YRL+TT
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT

Query:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHV----MKNEKN-RVKKWNSTGK--SRGWQPSLQSISEGGS
        ++V++G  AK+ +KLKK S   +     +  +    + NE   ++KK        SR WQPSLQSISEGGS
Subjt:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHV----MKNEKN-RVKKWNSTGK--SRGWQPSLQSISEGGS

AT5G50090.2 unknown protein

1.1e-31

47.88

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT
        MGNCQAVDTA ++IQHP GK ++L  PV+A  +M  NPGH V+LLIST   SS              +S +   +RLTRIKLL+PTD+LVLG +YRL+TT
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT

Query:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNE-KNRVKKWNSTGKSRGWQPSLQSISEGGS
        ++V++G  AK+ +KLKK S   +     +  +   +  N  ++   +  SR WQPSLQSISEGGS
Subjt:  QDVLQGFKAKQ-AKLKKSSLDFEGPEREINHVMKNE-KNRVKKWNSTGKSRGWQPSLQSISEGGS

AT5G62900.1 unknown protein

6.0e-27

37.22

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Query:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT
        MGNCQA + A+ +IQ P GK  R +  V A E++ ++PGH+VALL+S+ +                   P+  S+R+TRIKLL+P+D+L+LG +YRL+++
Subjt:  MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTT

Query:  QDVLQGFKAKQA-KLKKSSLDFEGPEREIN----------------HVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS
        ++V++G +AK++ K+KK   +F   E EIN                 + + ++  +    +T K R WQPSLQSISE  S
Subjt:  QDVLQGFKAKQA-KLKKSSLDFEGPEREIN----------------HVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGGAAATTGCCAAGCCGTGGACACAGCATCTCTAATCATCCAACACCCGACCGGAAAACCCGACCGATTATTCCGGCCGGTAACCGCCGGCGAGATCATGAACACAAA
TCCCGGCCATTATGTCGCTCTTCTCATCTCCACCAAAATCTGCTCGTCGGAAACCACCGCCACCCACCGCCGCCGCCGCCACACCCAAACAAACAGCCCCAATTCCAACT
CGGTCCGGTTGACCCGAATCAAGCTTCTCAAGCCAACCGATTCCTTGGTTCTCGGCCAAATTTACCGCCTCGTAACAACCCAAGATGTTTTGCAGGGTTTTAAAGCCAAA
CAGGCCAAATTGAAGAAAAGTTCATTGGATTTTGAGGGACCTGAAAGAGAAATCAATCACGTGATGAAAAATGAGAAAAATAGAGTGAAAAAATGGAATTCAACGGGTAA
ATCGAGAGGGTGGCAGCCTTCACTGCAAAGTATTTCAGAAGGTGGAAGCTGA

mRNA sequence

Show/hide mRNA sequence

ATAGTTCTCAATTCCTAGAGAGAGAAACACAATACCAGTAGAGAGAGAAACACAAAAGAAAAATAAAAAAACCCAATGGGAAATTGCCAAGCCGTGGACACAGCATCTCT
AATCATCCAACACCCGACCGGAAAACCCGACCGATTATTCCGGCCGGTAACCGCCGGCGAGATCATGAACACAAATCCCGGCCATTATGTCGCTCTTCTCATCTCCACCA
AAATCTGCTCGTCGGAAACCACCGCCACCCACCGCCGCCGCCGCCACACCCAAACAAACAGCCCCAATTCCAACTCGGTCCGGTTGACCCGAATCAAGCTTCTCAAGCCA
ACCGATTCCTTGGTTCTCGGCCAAATTTACCGCCTCGTAACAACCCAAGATGTTTTGCAGGGTTTTAAAGCCAAACAGGCCAAATTGAAGAAAAGTTCATTGGATTTTGA
GGGACCTGAAAGAGAAATCAATCACGTGATGAAAAATGAGAAAAATAGAGTGAAAAAATGGAATTCAACGGGTAAATCGAGAGGGTGGCAGCCTTCACTGCAAAGTATTT
CAGAAGGTGGAAGCTGAGATTTGTTCTGTTTTAGACTGAGATTTGTGTATAGGAAAGATTAGCACTTCATTTCTGAAACAGAACAGAGAAAAAAAGGGAAATGAAAGTTT
TTAATTTCATTGAGATATTTTTAAATAAAAGTTTTGGGAG

Protein sequence

Show/hide protein sequence

MGNCQAVDTASLIIQHPTGKPDRLFRPVTAGEIMNTNPGHYVALLISTKICSSETTATHRRRRHTQTNSPNSNSVRLTRIKLLKPTDSLVLGQIYRLVTTQDVLQGFKAK
QAKLKKSSLDFEGPEREINHVMKNEKNRVKKWNSTGKSRGWQPSLQSISEGGS

Sed0010485 (gene) of Chayote v1 genome