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Sed0010542 (gene) of Chayote v1 genome

Gene IDSed0010542
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor RADIALIS-like
Genome locationLG05:44547227..44548978
RNA-Seq ExpressionSed0010542
SyntenySed0010542
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0003700 - DNA-binding transcription factor activity (molecular function)
InterPro domainsIPR001005 - SANT/Myb domain
IPR009057 - Homeobox-like domain superfamily
IPR017884 - SANT domain
IPR044636 - Transcription factor RADIALIS-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6605078.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. sororia]1.2e-3582.35Show/hide
Query:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL
        M S+SS   SSSW+P QNKAFERALAVFDKDTPDRW+NVAKAVG KTVDEVK HFELLVEDVKHIESG +PFPNYT  SSSAPR S +NINDQEKRMRN+
Subjt:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL

Query:  KL
        KL
Subjt:  KL

KAG7035087.1 Transcription factor RADIALIS, partial [Cucurbita argyrosperma subsp. argyrosperma]5.2e-3682.35Show/hide
Query:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL
        M S+SS   SSSW+P QNKAFERALAVFDKDTPDRW+NVAKAVG KTVDEVK HFELLVEDVKHIESG +PFPNYT  SSSAPR S +NINDQEKRMRN+
Subjt:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL

Query:  KL
        KL
Subjt:  KL

XP_022946976.1 transcription factor RADIALIS-like [Cucurbita moschata]4.9e-3478.43Show/hide
Query:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL
        M S+SS   S+SW+P QNKAFE ALAVFDKDTPDRW+NVAKAVG KTVDEVK HFELLVEDVKHIESG +PFPNYT  SSSAPR S++NIN QE+RMRN+
Subjt:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL

Query:  KL
        KL
Subjt:  KL

XP_023513343.1 protein RADIALIS-like 2 [Cucurbita pepo subsp. pepo]4.9e-3479Show/hide
Query:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE
        M+S   SSSWTPKQNKAFERALAVFDKDTPDRW+NVAKAV GGKT DEVKTHF+LLVEDVKHIESG +PFPNY+S +SA   SN N++DQE+RMRNLKL+
Subjt:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE

XP_023515007.1 transcription factor RADIALIS-like [Cucurbita pepo subsp. pepo]1.4e-3681Show/hide
Query:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL
        M S+SS   S+SW+P QNKAFERALAVFDKDTPDRW+NVAKAVG KT DEVK HFELLVEDVKHIESG +PFPNYTSSSAPR S++NINDQE+RMRN+KL
Subjt:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL

TrEMBL top hitse value%identityAlignment
A0A0A0LL58 MYB transcription factor MYB1421.5e-3382.11Show/hide
Query:  SSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT-SSSAPRNSNENINDQEKRMRNLKL
        SSSSSWTP QNKAFERALAVFDKDTPDRW+NVAKAV GGKT DEVK HF+ LVEDVKHIESGR+PFP YT SSS+P  SN NI DQE+RMRN+KL
Subjt:  SSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT-SSSAPRNSNENINDQEKRMRNLKL

A0A6J1CYR5 protein RADIALIS-like 23.1e-3479.38Show/hide
Query:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL
        M+S  SS SWTP QNKAFERALAVFDKDTPDRW NVA AVGGKT DEVK HF+LLVEDVKHIESGRIPFPNYT+++   +SN N+ND+EKRMRNLKL
Subjt:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL

A0A6J1FXX9 protein RADIALIS-like 24.0e-3480Show/hide
Query:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE
        M S   SSSWTPKQNKAFERALAVFDKDTPDRW+NVAKAV GGKT DEVKTHF+LLVEDVKHIESG +PFPNY+S +SA   SN NINDQE+RMR+LKL+
Subjt:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE

A0A6J1G543 transcription factor RADIALIS-like2.4e-3478.43Show/hide
Query:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL
        M S+SS   S+SW+P QNKAFE ALAVFDKDTPDRW+NVAKAVG KTVDEVK HFELLVEDVKHIESG +PFPNYT  SSSAPR S++NIN QE+RMRN+
Subjt:  MTSLSS---SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYT--SSSAPRNSNENINDQEKRMRNL

Query:  KL
        KL
Subjt:  KL

A0A6J1JBS7 protein RADIALIS-like 29.0e-3479Show/hide
Query:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE
        M+S   SSSWTPK+NKAFERALAVFDKDTPDRW+NVAKAV GGKT DEVKTHF+LLVEDVKHIE G +PFPNY+S +SA   SN NINDQE+RMRNLKL+
Subjt:  MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAV-GGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTS-SSAPRNSNENINDQEKRMRNLKLE

SwissProt top hitse value%identityAlignment
F4JVB8 Protein RADIALIS-like 12.3e-2659.38Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKLE
        S  SS SWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVK H+ELLV+D+  IE+G +PFPNY +S     +N  ++ +EKRMRN++L+
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKLE

Q1A173 Protein RADIALIS-like 62.1e-2460.42Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENIND-QEKRMRNLKL
        S SS S WT  QNK FERALAV+DKDTPDRW NVAKAVGGKTV+EVK H+++LVED+ +IE+GR+P PNY +     +++ +IND   ++M+NLK+
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENIND-QEKRMRNLKL

Q58FS3 Transcription factor RADIALIS8.7e-2660.87Show/hide
Query:  SSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL
        S   W+ K+NKAFERALAV+DKDTPDRW NVA+AV G+T +EVK H+E+LVED+K+IESG++PFPNY      R +  N+   EKR RNLK+
Subjt:  SSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKL

Q6NNN0 Protein RADIALIS-like 34.0e-2367.12Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSS
        S+SSS+SWT K+NK FERALA +D+DTPDRW NVA+AVGGK+ +EV+ H+ELL+ DV  IESGR P PNY S+
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSS

Q9SIJ5 Protein RADIALIS-like 25.6e-2559.6Show/hide
Query:  SLSS--SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNE-NINDQEKRMRNLKLE
        S+SS  S SWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E K  ++LLV D++ IE+G +PFP+Y +++   NSN   + D+EKRMR++KL+
Subjt:  SLSS--SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNE-NINDQEKRMRNLKLE

Arabidopsis top hitse value%identityAlignment
AT1G19510.1 RAD-like 52.4e-2355.1Show/hide
Query:  TSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKR-MRNLKLE
        +S+SSSSSWT KQNK FERALAV+DKDTPDRW NVAKAVG K+ +EVK H+++LVED+ +IE   +P P Y +      S   I+D + R M+N++++
Subjt:  TSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKR-MRNLKLE

AT1G75250.1 RAD-like 62.9e-2461.8Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKR
        S SS S WT  QNK FERALAV+DKDTPDRW NVAKAVGGKTV+EVK H+++LVED+ +IE+GR+P PNY +     +++ +IND + R
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKR

AT1G75250.2 RAD-like 61.5e-2560.42Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENIND-QEKRMRNLKL
        S SS S WT  QNK FERALAV+DKDTPDRW NVAKAVGGKTV+EVK H+++LVED+ +IE+GR+P PNY +     +++ +IND   ++M+NLK+
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENIND-QEKRMRNLKL

AT2G21650.1 Homeodomain-like superfamily protein4.0e-2659.6Show/hide
Query:  SLSS--SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNE-NINDQEKRMRNLKLE
        S+SS  S SWT KQNKAFERALAV+D+DTPDRW NVA+AVGGKT +E K  ++LLV D++ IE+G +PFP+Y +++   NSN   + D+EKRMR++KL+
Subjt:  SLSS--SSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNE-NINDQEKRMRNLKLE

AT4G39250.1 RAD-like 11.6e-2759.38Show/hide
Query:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKLE
        S  SS SWT KQNKAFE+ALA +D+DTP+RW NVAK VGGKT +EVK H+ELLV+D+  IE+G +PFPNY +S     +N  ++ +EKRMRN++L+
Subjt:  SLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKLE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGACTTCTTTGTCCTCCTCCAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTCGAAAGGGCTTTGGCTGTCTTCGACAAGGACACCCCCGATCGCTGGATCAATGTCGC
CAAGGCCGTTGGTGGTAAGACCGTCGATGAAGTCAAGACACATTTTGAACTTCTCGTCGAAGATGTCAAGCACATTGAATCTGGTCGTATTCCCTTCCCTAACTACACCT
CCTCCTCTGCCCCTCGAAATTCCAATGAAAATATCAATGATCAAGAAAAAAGGATGAGAAACTTGAAGCTGGAATGA
mRNA sequenceShow/hide mRNA sequence
CCCTTCCCTATGCAACTCTTCTTCCTCACATAATCTTTTATCAATATGACTTCTTTGTCCTCCTCCAGCTCTTGGACTCCCAAGCAAAACAAAGCCTTCGAAAGGGCTTT
GGCTGTCTTCGACAAGGACACCCCCGATCGCTGGATCAATGTCGCCAAGGCCGTTGGTGGTAAGACCGTCGATGAAGTCAAGACACATTTTGAACTTCTCGTCGAAGATG
TCAAGCACATTGAATCTGGTCGTATTCCCTTCCCTAACTACACCTCCTCCTCTGCCCCTCGAAATTCCAATGAAAATATCAATGATCAAGAAAAAAGGATGAGAAACTTG
AAGCTGGAATGAGGAAGAATAAAGATTGATGGTTGCTTTTTTTTTTTTTTTTTGCCCCCTAAGATG
Protein sequenceShow/hide protein sequence
MTSLSSSSSWTPKQNKAFERALAVFDKDTPDRWINVAKAVGGKTVDEVKTHFELLVEDVKHIESGRIPFPNYTSSSAPRNSNENINDQEKRMRNLKLE