CuGenDBv2

Gene ID	Sed0010580
Organism	Sechium edule (Chayote v1)
Description	Nucleic acid-binding, OB-fold containing protein
Genome location	LG01:18677493..18680547
RNA-Seq Expression	Sed0010580
Synteny	Sed0010580
Gene Ontology terms	GO:0006352 - DNA-templated transcription, initiation (biological process) GO:0005736 - RNA polymerase I complex (cellular component) GO:0003899 - DNA-directed 5'-3' RNA polymerase activity (molecular function)
InterPro domains	IPR045113 - RNA polymerase Rpb7-like

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

XP_022940043.1 uncharacterized protein LOC111445794 isoform X1 [Cucurbita moschata]

1.7e-82

70.56

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+VIY+HPSKS KVSQA +                  +   L ++DE+FEGVLLAYEANIID +AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF+HRTKHGEE FVSR +K+HVIKVG MVRFLVKSF+EEILH SGSLVPSHTGSIH  EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                           DSVATDV+A +LNNDHQSK+KKQKTSRIS
Subjt:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

XP_022940045.1 uncharacterized protein LOC111445794 isoform X2 [Cucurbita moschata]

1.3e-82

70.85

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+VIY+HPSKS KVSQA +                  +   L ++DE+FEGVLLAYEANIID +AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF+HRTKHGEE FVSR +K+HVIKVG MVRFLVKSF+EEILH SGSLVPSHTGSIH  EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                          DSVATDV+A +LNNDHQSK+KKQKTSRIS
Subjt:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

XP_038889707.1 uncharacterized protein LOC120079556 isoform X1 [Benincasa hispida]

1.0e-82

70.08

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+V+Y+HPSKS KVSQA +  +  +                L ++DEKFEGVLLAYEANIID NAKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGF+S VITDEDIR+EF+HRTKHGEE FVSRVHK+HVIKVG M+RFLVKSF+EEILH SGSLVPSHTGSIHW EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  ---------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                        SV+TD +A ILNNDHQSK+K+QKT+RIS
Subjt:  ---------------DSVATDVHASILNNDHQSKSKKQKTSRIS

XP_038889709.1 uncharacterized protein LOC120079556 isoform X2 [Benincasa hispida]

7.7e-83

70.37

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+V+Y+HPSKS KVSQA +  +  +                L ++DEKFEGVLLAYEANIID NAKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGF+S VITDEDIR+EF+HRTKHGEE FVSRVHK+HVIKVG M+RFLVKSF+EEILH SGSLVPSHTGSIHW EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  --------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                       SV+TD +A ILNNDHQSK+K+QKT+RIS
Subjt:  --------------DSVATDVHASILNNDHQSKSKKQKTSRIS

XP_038898978.1 uncharacterized protein LOC120086413 isoform X3 [Benincasa hispida]

7.7e-83

69.76

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        MDG KVSDANMV+Y+HPSKS KVSQA + V                +   L ++DEKFEGVLLAYEA IID  AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        ML+EGKVVKLRQESIHVIVLGFASAVIT+EDIR+EF+HRTKHGEE FVSR HK+HVIKVG M+RFLVKSF+EEILH +GSLVPSHTGSIHW EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                           DSVAT+V+A ILNNDHQSK+KKQKT+RIS
Subjt:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LGG8 Uncharacterized protein

3.5e-81

68.42

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDANMV+Y+HPSKS K+SQA +                  +   L ++DEKFEGVLLAYEA IID NAKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVIT EDIR+EF+HRTKHGEE FVSR HK+H+IKVG M+R LVKSF+EEILH SGSLVPSHTGSIHW EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                          DSV TDV+A ILNNDHQ K+KKQK +RIS
Subjt:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

A0A6J1D5Y9 uncharacterized protein LOC111016757

3.5e-81

67.74

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+V+Y+HPSKS KVSQA +                  +   L ++DE+FEGVLLAY+A I D +AKILSGVHPYFGVT+ AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQES+HVIVLGFASA ITDEDIR+EF+HRTKH EE FVSR HK+HVIKVG M+RFLVKSF+EEILH SGSLVPSHTGSIHW EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                           DSVATDV+A ILNNDHQSK+KKQKTSRIS
Subjt:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

A0A6J1FN75 uncharacterized protein LOC111445794 isoform X1

8.3e-83

70.56

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+VIY+HPSKS KVSQA +                  +   L ++DE+FEGVLLAYEANIID +AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF+HRTKHGEE FVSR +K+HVIKVG MVRFLVKSF+EEILH SGSLVPSHTGSIH  EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                           DSVATDV+A +LNNDHQSK+KKQKTSRIS
Subjt:  -------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

A0A6J1FPG3 uncharacterized protein LOC111445794 isoform X2

6.3e-83

70.85

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+VIY+HPSKS KVSQA +                  +   L ++DE+FEGVLLAYEANIID +AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF+HRTKHGEE FVSR +K+HVIKVG MVRFLVKSF+EEILH SGSLVPSHTGSIH  EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS
                          DSVATDV+A +LNNDHQSK+KKQKTSRIS
Subjt:  ------------------DSVATDVHASILNNDHQSKSKKQKTSRIS

A0A6J1J4W1 uncharacterized protein LOC111481277 isoform X2

3.5e-81

70.66

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G KVSDAN+VIY+HPSKS KVSQA +                  +   L ++DE+FEGVLLAYEANIID +AKILSGVHPYFGVTI AKLLLFSPKPN
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----
        MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEF+HRTKHGEE FVSR HK+HVIKVG MVRFLVKSF+EEILH SGSLVPSHTGSIH  EKNS    
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNS----

Query:  ------------------DSVATDVHASILNNDHQSKSKKQK
                          DSVATDV+A +LNNDHQSK+KKQK
Subjt:  ------------------DSVATDVHASILNNDHQSKSKKQK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G75670.1 DNA-directed RNA polymerases

3.7e-51

50.25

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G K+S+A ++I+IHPS+S  V Q             R +  +      L +Y+E F+GVLLAY+A +    AKIL+G+HPYFGV +N +LLLF PKP 
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNSD
          +EGK+VK+  ESIHVIVLGF++AVITD DIR EF++R + GE  FVSR HK H +K+G M+R  V+SF+EE++H +GSL+P +TG + W EK S+
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNSD

AT1G75670.2 DNA-directed RNA polymerases

3.7e-51

50.25

Show/hide

Query:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN
        M+G K+S+A ++I+IHPS+S  V Q             R +  +      L +Y+E F+GVLLAY+A +    AKIL+G+HPYFGV +N +LLLF PKP 
Subjt:  MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPN

Query:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNSD
          +EGK+VK+  ESIHVIVLGF++AVITD DIR EF++R + GE  FVSR HK H +K+G M+R  V+SF+EE++H +GSL+P +TG + W EK S+
Subjt:  MLLEGKVVKLRQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNSD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGGATGGGTTTAAGGTTTCGGATGCGAATATGGTTATTTACATTCACCCATCCAAAAGCAACAAGGTTTCTCAAGCGTTCATTTATGTAGTATGGTATATACGTGTGAG
CTTTCGTATTATTGACTGCATTTTTTGTATATTTTGTTCCTTGTGTAGATATGATGAAAAATTTGAAGGTGTGCTACTGGCTTATGAGGCCAACATTATTGATATAAATG
CGAAGATTCTATCTGGAGTGCATCCCTATTTTGGCGTGACAATAAATGCGAAGCTATTACTTTTCTCTCCAAAACCAAACATGCTTTTAGAGGGAAAGGTGGTGAAGCTT
AGGCAAGAATCAATCCATGTTATTGTCTTAGGTTTTGCTTCTGCTGTCATAACCGATGAAGACATTCGCAATGAATTCGAGCATAGAACAAAACATGGAGAAGAAAGGTT
TGTCAGCAGAGTTCACAAGAACCATGTGATAAAGGTTGGAATAATGGTACGCTTTTTGGTGAAAAGTTTTAATGAGGAAATATTGCATTTCTCTGGATCCCTAGTTCCAT
CTCACACAGGGAGCATTCATTGGTTTGAGAAGAATTCAGATAGTGTTGCCACTGATGTACATGCATCTATCTTGAACAATGACCATCAATCTAAATCCAAAAAACAAAAA
ACTAGCAGAATATCATGA

mRNA sequence

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Protein sequence

Show/hide protein sequence

MDGFKVSDANMVIYIHPSKSNKVSQAFIYVVWYIRVSFRIIDCIFCIFCSLCRYDEKFEGVLLAYEANIIDINAKILSGVHPYFGVTINAKLLLFSPKPNMLLEGKVVKL
RQESIHVIVLGFASAVITDEDIRNEFEHRTKHGEERFVSRVHKNHVIKVGIMVRFLVKSFNEEILHFSGSLVPSHTGSIHWFEKNSDSVATDVHASILNNDHQSKSKKQK
TSRIS

Sed0010580 (gene) of Chayote v1 genome