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Sed0010617 (gene) of Chayote v1 genome

Gene IDSed0010617
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG01:2284182..2284751
RNA-Seq ExpressionSed0010617
SyntenySed0010617
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR012337 - Ribonuclease H-like superfamily
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010676027.1 PREDICTED: uncharacterized protein LOC104891937 [Beta vulgaris subsp. vulgaris]1.6e-1233.53Show/hide
Query:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEF
        W  PP+  +KLN D S   SS+   +G+++R+  G   + G K+   S+SV   E  A+++ +      +I  L   ++E D L VI AI +      E 
Subjt:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEF

Query:  NNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLA-KLDGSDSVCHIYPPYPVEDCISFWKGIL--PP
        NNI++DIR  +   G   V HC R  N+ ADLLA +  G D +   YPP+ ++  +   K +L  PP
Subjt:  NNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLA-KLDGSDSVCHIYPPYPVEDCISFWKGIL--PP

XP_018821989.1 uncharacterized protein LOC108992010 [Juglans regia]4.5e-1230.86Show/hide
Query:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS
        ++W APP G +KLN D +F+   S+ GIG ++RD +G   +        S +V  LEGLAI   L       I  L    +ESD+L V+     +    +
Subjt:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS

Query:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD
           N+I ++R  M       ++H  R CN     LAKL  S S             IS W G  P V+ + +  D
Subjt:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD

XP_030509282.1 uncharacterized protein LOC115723963 [Cannabis sativa]9.2e-1332.97Show/hide
Query:  MKIVVEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISE
        ++  ++  W  PP G  KLN DA  + +++  G+G I+RD  G+      K    S     +E LA+   + F      Q L   L+E+DAL V  AI  
Subjt:  MKIVVEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISE

Query:  DSLDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD
         ++  S FN+II+D+   ++   +V+VSH  R  N AAD LAK   G D           EDC  FW   +PP + S++  D
Subjt:  DSLDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD

XP_030940021.1 uncharacterized protein LOC115964936 [Quercus lobata]7.8e-1230.41Show/hide
Query:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE
        KW APP G +K+N D + +       IG I+RD +G P     K      SV++ E LA+++ +    E     L  ++ E DAL +I+A++E ++  S+
Subjt:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE

Query:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV
        F +II +IR    +       H  R  NR A  LAK      V  +            WKG++P VV  ++
Subjt:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV

XP_042983291.1 uncharacterized protein LOC122312694 [Carya illinoinensis]9.2e-1332.76Show/hide
Query:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE
        KW  PP G +KLN D +F+ S S+ GIG IVRD +G   +   K    +  V  +E LAI   L F     I  L   ++ESD+  V+   ++     + 
Subjt:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE

Query:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD
        F N+I + +  M+   +  V H  R CN AA LLAK   S           V++ +S W G  P V+ +++  D
Subjt:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD

TrEMBL top hitse value%identityAlignment
A0A6J5WPU6 Reverse transcriptase domain-containing protein6.4e-1234.25Show/hide
Query:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEF
        W  PP G  K+N DA+++     GG+GW++RD  G+    G +     SS  ++E LAIR ALS   E     L  I+VESD+ + I  ++  +   S+ 
Subjt:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEF

Query:  NNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIY
          I+ DIR  +A+L  VS     R CN+AA  +A         H++
Subjt:  NNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIY

A0A803PJK4 Uncharacterized protein3.8e-1235.25Show/hide
Query:  VEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLD
        V  KW+ PP G  KLNTDA+ +  + I G G I+RD  G       K        +V+E LA+R +L ++   +   LP   +E+D+L V+K +   SL+
Subjt:  VEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLD

Query:  CSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAK
         S+F++++ DI   M+    V +SH  R  N  A +LAK
Subjt:  CSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAK

A0A803PS58 Uncharacterized protein3.8e-1231.07Show/hide
Query:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRG------VPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDS
        W  PP G  KLN DA+ + S  I G+G ++R   G         ++G  A H+      +E +A+  +LS+  +     LP  L+E+DAL+V+ A+ + S
Subjt:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRG------VPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDS

Query:  LDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV
           S F ++++DI   ++    V+VSH  R  N AAD LAK   G D  C             +W   +PP + S++
Subjt:  LDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMV

A0A803QC75 Uncharacterized protein1.3e-1232.34Show/hide
Query:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS
        ++W  P    +KLN DA+ +    + GIG I+RD  G       K +    S   +E +A+  +L+++ +   Q LP  LVESDAL V+ A+       S
Subjt:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS

Query:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCH--------IYPPYPVEDCIS
         F+++I+D+   ++ L  V+++H  R  N AA  LAK   G D  C         IY    VE+C+S
Subjt:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCH--------IYPPYPVEDCIS

A0A803QG78 Uncharacterized protein8.4e-1231.11Show/hide
Query:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGV------PKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDS
        W  PP    KLN DA+ + S+ + G+G + RD  G+       K++G    H+  ++ +  G         +H A     P + +E+DAL V  A+   +
Subjt:  WIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGV------PKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDS

Query:  LDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD
          CS FN+II+D+   ++    V+VSH  R  N AA  LAK   G D           EDC  FW   +PP + S++  D
Subjt:  LDCSEFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLD-GSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMD

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT2G04420.1 Polynucleotidyl transferase, ribonuclease H-like superfamily protein6.8e-0626.35Show/hide
Query:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS
        +KW  PP G  K N D SFN+ +     GW++RD +G  K          ++    E  A+  A+        Q    ++ E D+ +V + ++   +   
Subjt:  EKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCS

Query:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIY
         FN I     W       V  S   R  N+ AD+LAK         IY
Subjt:  EFNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIY

AT4G29090.1 Ribonuclease H-like superfamily protein1.0e-0627.21Show/hide
Query:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE
        +W  PP    K NTDA++N  +   GIGW++R+ +G  K +G +A  K  SV   E  A+R A+  +          ++ ESD+  +I+ ++ D +    
Subjt:  KWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSE

Query:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAK
            I D++  ++    V      R  N  A+ +A+
Subjt:  FNNIIIDIRWFMAALGMVSVSHCGRRCNRAADLLAK


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAAGATTGTTGTGGAGGAGAAATGGATTGCCCCTCCTAGAGGTTGTTGGAAGCTGAATACTGATGCTTCCTTTAATTTTTCGTCTAGTATAGGGGGCATTGGCTGGAT
TGTTCGTGACGGGAGAGGTGTTCCAAAGATTGTTGGGTGGAAGGCTAGGCACAAGAGTTCTTCTGTCAAGGTCCTTGAAGGCCTGGCTATTCGCGATGCTCTAAGCTTTA
TCCACGAGGCCGATATTCAAATGCTTCCCCCGATTCTTGTTGAATCCGACGCTTTAGAGGTGATCAAGGCCATTTCGGAGGATTCTTTAGATTGCTCTGAGTTCAACAAT
ATCATTATTGATATTAGATGGTTTATGGCAGCGCTTGGGATGGTTTCTGTGTCTCATTGTGGTAGGCGTTGTAATAGGGCGGCTGATTTGCTTGCCAAGTTAGATGGTTC
TGATTCTGTTTGTCATATTTATCCTCCCTATCCGGTGGAAGATTGTATTTCCTTTTGGAAGGGGATTCTTCCCCCTGTTGTAGGCTCCATGGTGGAGATGGATTGTGTTG
GTTTGTTTGGCTTGGGTTGA
mRNA sequenceShow/hide mRNA sequence
ATGAAGATTGTTGTGGAGGAGAAATGGATTGCCCCTCCTAGAGGTTGTTGGAAGCTGAATACTGATGCTTCCTTTAATTTTTCGTCTAGTATAGGGGGCATTGGCTGGAT
TGTTCGTGACGGGAGAGGTGTTCCAAAGATTGTTGGGTGGAAGGCTAGGCACAAGAGTTCTTCTGTCAAGGTCCTTGAAGGCCTGGCTATTCGCGATGCTCTAAGCTTTA
TCCACGAGGCCGATATTCAAATGCTTCCCCCGATTCTTGTTGAATCCGACGCTTTAGAGGTGATCAAGGCCATTTCGGAGGATTCTTTAGATTGCTCTGAGTTCAACAAT
ATCATTATTGATATTAGATGGTTTATGGCAGCGCTTGGGATGGTTTCTGTGTCTCATTGTGGTAGGCGTTGTAATAGGGCGGCTGATTTGCTTGCCAAGTTAGATGGTTC
TGATTCTGTTTGTCATATTTATCCTCCCTATCCGGTGGAAGATTGTATTTCCTTTTGGAAGGGGATTCTTCCCCCTGTTGTAGGCTCCATGGTGGAGATGGATTGTGTTG
GTTTGTTTGGCTTGGGTTGA
Protein sequenceShow/hide protein sequence
MKIVVEEKWIAPPRGCWKLNTDASFNFSSSIGGIGWIVRDGRGVPKIVGWKARHKSSSVKVLEGLAIRDALSFIHEADIQMLPPILVESDALEVIKAISEDSLDCSEFNN
IIIDIRWFMAALGMVSVSHCGRRCNRAADLLAKLDGSDSVCHIYPPYPVEDCISFWKGILPPVVGSMVEMDCVGLFGLG