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Sed0010668 (gene) of Chayote v1 genome

Gene IDSed0010668
OrganismSechium edule (Chayote v1)
Description28S ribosomal protein S33, mitochondrial
Genome locationLG01:11078730..11081956
RNA-Seq ExpressionSed0010668
SyntenySed0010668
Gene Ontology termsGO:0005739 - mitochondrion (cellular component)
GO:0005840 - ribosome (cellular component)
InterPro domainsIPR013219 - Ribosomal protein S27/S33, mitochondrial


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7019771.1 RSM27, partial [Cucurbita argyrosperma subsp. argyrosperma]3.3e-4187.25Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLK ++AAA+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
XP_004145134.1 28S ribosomal protein S33, mitochondrial isoform X2 [Cucumis sativus]3.3e-4189.22Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLKS++AAA+N GVTEARARIFGHI+NPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR E+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
XP_022137168.1 28S ribosomal protein S33, mitochondrial [Momordica charantia]8.6e-4289.22Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLKSI+A A+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
XP_023000758.1 28S ribosomal protein S33, mitochondrial [Cucurbita maxima]2.5e-4187.25Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLK ++AAA+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
XP_038876969.1 28S ribosomal protein S33, mitochondrial [Benincasa hispida]5.1e-4291.18Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATN LKS+VAAA+N GVTEARARIFGHI+NPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
TrEMBL top hitse value%identityAlignment
A0A0A0LRA7 Uncharacterized protein1.6e-4189.22Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLKS++AAA+N GVTEARARIFGHI+NPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMAR E+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
A0A5A7UM66 28S ribosomal protein S332.7e-4189.22Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLKS++AAA++ GVTEARARIFGHI+NPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMAR E+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
A0A6J1C6H4 28S ribosomal protein S33, mitochondrial4.2e-4289.22Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLKSI+A A+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKV+QWYPYDIKKDDPLVMARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
A0A6J1EDC3 28S ribosomal protein S33, mitochondrial1.6e-4187.25Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLK ++AAA+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
A0A6J1KNI8 28S ribosomal protein S33, mitochondrial1.2e-4187.25Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MATNSLK ++AAA+N GVTEARARIFGH++NPTGQRSTHKLLRKKLIGDKVA+WYPYDIKKDDPL+MARQE+ER SKL+MLKRRGKG PKKGQGRRAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT5G44710.1 CONTAINS InterPro DOMAIN/s: Ribosomal protein S27/S33, mitochondrial (InterPro:IPR013219); Has 101 Blast hits to 101 proteins in 55 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 59; Plants - 26; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).8.1e-3874.51Show/hide
Query:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR
        MA+ SLKS++++A+  GVTEARARIFGH++NPTGQRS HK+LRKKLIGDKVA+WYPYDIK +DP V+AR+E+ER SKL+MLKRR KG PKKG G+RAAKR
Subjt:  MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKR

Query:  NK
        NK
Subjt:  NK

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCAGCAATCAATACGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATAATTAACCCAACGGGTCAGCGATC
TACCCACAAGCTTCTGCGTAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGATATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAAGAAGAGC
GCAAATCTAAGCTTGACATGCTGAAGCGGCGTGGTAAAGGAGCGCCTAAGAAGGGCCAAGGCCGGCGTGCGGCTAAGCGTAATAAGTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTACTAATAGCCTGAAGAGTATTGTTGCTGCAGCAATCAATACGGGAGTGACAGAAGCAAGGGCAAGGATATTTGGTCACATAATTAACCCAACGGGTCAGCGATC
TACCCACAAGCTTCTGCGTAAAAAACTCATCGGTGACAAAGTAGCTCAGTGGTATCCATACGATATCAAGAAGGATGATCCTCTTGTCATGGCTCGTCAAGAAGAAGAGC
GCAAATCTAAGCTTGACATGCTGAAGCGGCGTGGTAAAGGAGCGCCTAAGAAGGGCCAAGGCCGGCGTGCGGCTAAGCGTAATAAGTAG
Protein sequenceShow/hide protein sequence
MATNSLKSIVAAAINTGVTEARARIFGHIINPTGQRSTHKLLRKKLIGDKVAQWYPYDIKKDDPLVMARQEEERKSKLDMLKRRGKGAPKKGQGRRAAKRNK