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Sed0010675 (gene) of Chayote v1 genome

Gene IDSed0010675
OrganismSechium edule (Chayote v1)
Descriptionprotein LSD1 isoform X2
Genome locationLG04:6889027..6891404
RNA-Seq ExpressionSed0010675
SyntenySed0010675
Gene Ontology termsGO:0005634 - nucleus (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAE8650032.1 hypothetical protein Csa_010851 [Cucumis sativus]1.3e-0969.23Show/hide
Query:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +ITK+PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPTSG
Subjt:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
XP_008448702.2 PREDICTED: protein LSD1 isoform X2 [Cucumis melo]1.3e-0664.58Show/hide
Query:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Subjt:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
XP_008448703.1 PREDICTED: protein LOL1 isoform X1 [Cucumis melo]1.8e-0865.38Show/hide
Query:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +ITK+PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Subjt:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
XP_022145337.1 protein LSD1-like [Momordica charantia]6.5e-0662.5Show/hide
Query:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +P PPVTCC  QS++VCSGCKNL       TSICC LC++ SPVPT G
Subjt:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
XP_031738784.1 protein LSD1 [Cucumis sativus]9.1e-0868.75Show/hide
Query:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPTSG
Subjt:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
TrEMBL top hitse value%identityAlignment
A0A0A0L592 zf-LSD1 domain-containing protein4.0e-0954.79Show/hide
Query:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGSCLHAQFAHPSVDEKPCSSSV
        +ITK+PFPPVTCC  Q+QI+CSGCKNL       TSICCALC+A +PVPT            SV   PCS +V
Subjt:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGSCLHAQFAHPSVDEKPCSSSV
A0A1S3BJQ2 protein LSD1 isoform X26.4e-0764.58Show/hide
Query:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Subjt:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
A0A1S3BKC0 protein LOL1 isoform X18.9e-0965.38Show/hide
Query:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +ITK+PFP VTCC  Q+QI+CSGCKN+       TSICCALC+A +PVPTSG
Subjt:  HITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
A0A6J1CWA3 protein LSD1-like3.2e-0662.5Show/hide
Query:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
        +P PPVTCC  QS++VCSGCKNL       TSICC LC++ SPVPT G
Subjt:  LPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSG
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G32540.1 lsd one like 11.3e-0443.86Show/hide
Query:  FLQQHITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGS
        FL + I K     V     QSQ+VCSGC+NL       TS+CCA+C A + VP  G+
Subjt:  FLQQHITKLPFPPVTCCQSQSQIVCSGCKNL-------TSICCALCYAASPVPTSGS

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCCAAATTTTGAAGATATCTCAAAGGAAAAGAAGTTTCTTCAACAACACATCACAAAACTGCCATTTCCTCCAGTTACTTGTTGTCAAAGTCAAAGCCAAATAGTGTG
CTCTGGATGTAAAAATTTAACCTCCATTTGCTGTGCTCTTTGCTATGCTGCATCCCCTGTGCCAACCTCTGGCAGTTGTTTACACGCTCAGTTTGCCCATCCGTCTGTGG
ATGAAAAGCCGTGCTCCTCTTCAGTCGCGTACCTTGACTCTTGA
mRNA sequenceShow/hide mRNA sequence
ATGCCAAATTTTGAAGATATCTCAAAGGAAAAGAAGTTTCTTCAACAACACATCACAAAACTGCCATTTCCTCCAGTTACTTGTTGTCAAAGTCAAAGCCAAATAGTGTG
CTCTGGATGTAAAAATTTAACCTCCATTTGCTGTGCTCTTTGCTATGCTGCATCCCCTGTGCCAACCTCTGGCAGTTGTTTACACGCTCAGTTTGCCCATCCGTCTGTGG
ATGAAAAGCCGTGCTCCTCTTCAGTCGCGTACCTTGACTCTTGA
Protein sequenceShow/hide protein sequence
MPNFEDISKEKKFLQQHITKLPFPPVTCCQSQSQIVCSGCKNLTSICCALCYAASPVPTSGSCLHAQFAHPSVDEKPCSSSVAYLDS