; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010676 (gene) of Chayote v1 genome

Gene IDSed0010676
OrganismSechium edule (Chayote v1)
Descriptionubiquitin-like
Genome locationLG07:43180541..43180987
RNA-Seq ExpressionSed0010676
SyntenySed0010676
Gene Ontology termsGO:0019941 - modification-dependent protein catabolic process (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0043231 - intracellular membrane-bounded organelle (cellular component)
GO:0005515 - protein binding (molecular function)
InterPro domainsIPR000626 - Ubiquitin-like domain
IPR019956 - Ubiquitin domain
IPR029071 - Ubiquitin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0025481.1 polyubiquitin-like [Cucumis melo var. makuwa]1.2e-2851.03Show/hide
Query:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT
        Q + +NNN    + L AAI AVQ L D+D++L  EAFDFL+K+NNA +F+AM A LR +WL RKL    +KI+ KTI+ + I + V    TIEE+K KL 
Subjt:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT

Query:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
        E   YL +  R +  GKELE+G+SL DY I DG  IH L R CGC
Subjt:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

KAA0025486.1 polyubiquitin-like [Cucumis melo var. makuwa]2.3e-2749.66Show/hide
Query:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT
        Q + + NN   S+ L AAI AVQ LPD+ ++LL EAFDFL+KR +A +F+A+   LR KWL RKL  +P +I    +    I L+V    TI+E+K KL 
Subjt:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT

Query:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
        E  GY  +   L+Y GK LEDG+SL DY I DGC IH +LR CGC
Subjt:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

XP_008463442.1 PREDICTED: polyubiquitin-like [Cucumis melo]9.0e-2445.26Show/hide
Query:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL
        ++S  S+   I+AV+ LPD+D++L+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQP ++I  KT+   ++ L+VL +DTI +VKAK+    GY 
Subjt:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL

Query:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC
            RLV+ G +L+D ++L   G+  G  +HL+L  C
Subjt:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC

XP_022154970.1 ubiquitin-like isoform X1 [Momordica charantia]8.5e-2240.71Show/hide
Query:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKL-RPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGY
        + +S S+S+ A I+AVQ LPD+D++L+L+A DF     N  IF+A+  +LR++WL+R L R   ++I  K +  + +   +L S+TI+ VKAK+    GY
Subjt:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKL-RPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGY

Query:  LVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
             RL+Y G++LEDG++L +Y I  G  +H++ R CGC
Subjt:  LVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

XP_022154972.1 ubiquitin-like isoform X2 [Momordica charantia]6.5e-2241.01Show/hide
Query:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL
        + +S S+S+ A I+AVQ LPD+D++L+L+A DF     N  IF+A+  +LR++WL+R L P+  +I  K +  + +   +L S+TI+ VKAK+    GY 
Subjt:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL

Query:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
            RL+Y G++LEDG++L +Y I  G  +H++ R CGC
Subjt:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

TrEMBL top hitse value%identityAlignment
A0A1S3CKU5 polyubiquitin-like4.4e-2445.26Show/hide
Query:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL
        ++S  S+   I+AV+ LPD+D++L+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQP ++I  KT+   ++ L+VL +DTI +VKAK+    GY 
Subjt:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL

Query:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC
            RLV+ G +L+D ++L   G+  G  +HL+L  C
Subjt:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC

A0A5A7SML9 Polyubiquitin-like5.9e-2951.03Show/hide
Query:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT
        Q + +NNN    + L AAI AVQ L D+D++L  EAFDFL+K+NNA +F+AM A LR +WL RKL    +KI+ KTI+ + I + V    TIEE+K KL 
Subjt:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT

Query:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
        E   YL +  R +  GKELE+G+SL DY I DG  IH L R CGC
Subjt:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

A0A5D3BMH5 Polyubiquitin-like4.4e-2445.26Show/hide
Query:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL
        ++S  S+   I+AV+ LPD+D++L+L+AFDFL D  N A +F++M A+LRRKWL++KLRPQP ++I  KT+   ++ L+VL +DTI +VKAK+    GY 
Subjt:  ASSSMSLAAAIRAVQELPDLDDNLLLEAFDFL-DKRNNAIIFVAMQARLRRKWLMRKLRPQP-LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL

Query:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC
            RLV+ G +L+D ++L   G+  G  +HL+L  C
Subjt:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWC

A0A5D3BQI8 Polyubiquitin-like1.1e-2749.66Show/hide
Query:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT
        Q + + NN   S+ L AAI AVQ LPD+ ++LL EAFDFL+KR +A +F+A+   LR KWL RKL  +P +I    +    I L+V    TI+E+K KL 
Subjt:  QLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLT

Query:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
        E  GY  +   L+Y GK LEDG+SL DY I DGC IH +LR CGC
Subjt:  EDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

A0A6J1DN50 ubiquitin-like isoform X23.1e-2241.01Show/hide
Query:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL
        + +S S+S+ A I+AVQ LPD+D++L+L+A DF     N  IF+A+  +LR++WL+R L P+  +I  K +  + +   +L S+TI+ VKAK+    GY 
Subjt:  NNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYL

Query:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC
            RL+Y G++LEDG++L +Y I  G  +H++ R CGC
Subjt:  VSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC

SwissProt top hitse value%identityAlignment
P0CH10 Ubiquitin-60S ribosomal protein L401.3e-0944Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTIE VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

P0CH11 Ubiquitin-60S ribosomal protein L401.3e-0944Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTIE VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

P0CH27 Ubiquitin-60S ribosomal protein L401.3e-0944Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTIE VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

P14795 Ubiquitin-60S ribosomal protein L401.3e-0944Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTIE VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

Q39256 Polyubiquitin 85.3e-1144Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  +T+  + I L V  SDTI+ VKAK+ +  G L    RL++ GK+LEDG++L DY I     +HL+LR CG
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

Arabidopsis top hitse value%identityAlignment
AT1G23410.1 Ribosomal protein S27a / Ubiquitin family protein2.1e-1042.67Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTI+ VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

AT1G31340.1 related to ubiquitin 12.1e-1042.67Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTI+ VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

AT1G65350.1 ubiquitin 132.1e-1042.67Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTI+ VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

AT2G47110.1 ubiquitin 62.1e-1042.67Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  KT+  + I L V  SDTI+ VKAK+ +  G      RL++ GK+LEDG++L DY I     +HL+LR  G
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG

AT3G09790.1 ubiquitin 83.8e-1244Show/hide
Query:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG
        ++I  +T+  + I L V  SDTI+ VKAK+ +  G L    RL++ GK+LEDG++L DY I     +HL+LR CG
Subjt:  LKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLVSNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCG


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAAGTCAACTTTCATTTATGAACAATAATGCCTCAAGCTCCATGTCCCTTGCGGCTGCAATTCGGGCCGTGCAGGAATTACCCGACCTCGACGACAACCTTCTTCT
CGAGGCCTTTGATTTTCTAGACAAGCGAAATAATGCCATAATCTTTGTTGCAATGCAAGCCAGATTACGAAGAAAGTGGCTGATGAGAAAACTTCGTCCACAACCTTTGA
AGATTATAGCCAAAACTATCCACGACGAGAGAATAAAATTGAACGTTTTAATGTCGGACACAATCGAGGAGGTGAAGGCTAAACTTACTGAAGATACAGGATATCTTGTA
AGCAATGCAAGGCTGGTTTATATGGGAAAGGAGCTTGAAGATGGCAAAAGTTTAGTAGACTATGGCATCTTGGATGGCTGTTGTATTCATTTACTTTTACGTTGGTGTGG
TTGTTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAAGTCAACTTTCATTTATGAACAATAATGCCTCAAGCTCCATGTCCCTTGCGGCTGCAATTCGGGCCGTGCAGGAATTACCCGACCTCGACGACAACCTTCTTCT
CGAGGCCTTTGATTTTCTAGACAAGCGAAATAATGCCATAATCTTTGTTGCAATGCAAGCCAGATTACGAAGAAAGTGGCTGATGAGAAAACTTCGTCCACAACCTTTGA
AGATTATAGCCAAAACTATCCACGACGAGAGAATAAAATTGAACGTTTTAATGTCGGACACAATCGAGGAGGTGAAGGCTAAACTTACTGAAGATACAGGATATCTTGTA
AGCAATGCAAGGCTGGTTTATATGGGAAAGGAGCTTGAAGATGGCAAAAGTTTAGTAGACTATGGCATCTTGGATGGCTGTTGTATTCATTTACTTTTACGTTGGTGTGG
TTGTTAA
Protein sequenceShow/hide protein sequence
MGSQLSFMNNNASSSMSLAAAIRAVQELPDLDDNLLLEAFDFLDKRNNAIIFVAMQARLRRKWLMRKLRPQPLKIIAKTIHDERIKLNVLMSDTIEEVKAKLTEDTGYLV
SNARLVYMGKELEDGKSLVDYGILDGCCIHLLLRWCGC