; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010684 (gene) of Chayote v1 genome

Gene IDSed0010684
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG06:39425208..39425657
RNA-Seq ExpressionSed0010684
SyntenySed0010684
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_010688587.1 PREDICTED: uncharacterized protein LOC104902499 [Beta vulgaris subsp. vulgaris]6.1e-0545.45Show/hide
Query:  EIVRGK--KFRMGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDA
        ++  GK  K  +GA++R+   +V+AA+ +P Q   +V+ GEALA++ GI+ AME GFR+ EVETD+
Subjt:  EIVRGK--KFRMGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDA
XP_030970468.1 uncharacterized protein LOC115990836 [Quercus lobata]8.8e-0449.21Show/hide
Query:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLA
        +G VVRN R  VMAA+A+ I +   +EV E LA +  +Q+ +ELGF     E DAEIV K LA
Subjt:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLA
TrEMBL top hitse value%identityAlignment
A0A1U8K579 uncharacterized protein LOC1079124469.5e-0430.5Show/hide
Query:  RNKVVMINQEDTNFKLIDW-GYCQTYYREFLDATKLNL-VKMPKNEIVRG-----------------KKFRMGAVVRNDREE-VMAAVAKPIQQVLQVEV
        RNK+V    E  NF+L D   + Q+YY++   A   NL V M +N + R                      + AV+  D E  ++ A   P+  ++   V
Subjt:  RNKVVMINQEDTNFKLIDW-GYCQTYYREFLDATKLNL-VKMPKNEIVRG-----------------KKFRMGAVVRNDREE-VMAAVAKPIQQVLQVEV

Query:  GEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDR
         EA A    + +A+++GFR++ +E D+ IV+KKL +N  DR
Subjt:  GEALAIRDGIQWAMELGFRRLEVETDAEIVVKKLANNVIDR
A0A6J5TRE1 RNase H domain-containing protein5.6e-0441.67Show/hide
Query:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK
        +G V+R+DR E++AA AKP+  +    V E  AIR G+Q AM+LG + +++E DA+  ++
Subjt:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVVK
A0A6J5WEB1 RNase H domain-containing protein9.5e-0442.37Show/hide
Query:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVV
        +G V+R+DR E++AA AKP+  +    V E  AIR G+Q AM+LG + +++E DA+  +
Subjt:  MGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVETDAEIVV
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTACGAACCGAAATAAGGTGGTTATGATTAACCAGGAGGATACAAACTTTAAATTAATCGATTGGGGTTATTGCCAAACTTACTATCGTGAATTTCTAGATGC
TACAAAATTAAATCTCGTGAAAATGCCAAAAAATGAGATCGTTAGAGGTAAAAAATTTAGGATGGGAGCAGTCGTTCGGAATGATCGCGAAGAAGTTATGGCTGCAGTGG
CGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACT
GATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTACGAACCGAAATAAGGTGGTTATGATTAACCAGGAGGATACAAACTTTAAATTAATCGATTGGGGTTATTGCCAAACTTACTATCGTGAATTTCTAGATGC
TACAAAATTAAATCTCGTGAAAATGCCAAAAAATGAGATCGTTAGAGGTAAAAAATTTAGGATGGGAGCAGTCGTTCGGAATGATCGCGAAGAAGTTATGGCTGCAGTGG
CGAAGCCTATACAACAGGTGCTCCAAGTTGAAGTTGGAGAAGCTTTAGCCATTCGTGATGGGATACAATGGGCTATGGAGCTAGGATTTCGAAGACTAGAGGTGGAAACT
GATGCCGAAATTGTGGTTAAAAAACTTGCAAACAATGTAATCGACCGCTAA
Protein sequenceShow/hide protein sequence
MGVTNRNKVVMINQEDTNFKLIDWGYCQTYYREFLDATKLNLVKMPKNEIVRGKKFRMGAVVRNDREEVMAAVAKPIQQVLQVEVGEALAIRDGIQWAMELGFRRLEVET
DAEIVVKKLANNVIDR