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Sed0010689 (gene) of Chayote v1 genome

Gene IDSed0010689
OrganismSechium edule (Chayote v1)
DescriptionAlba domain-containing protein
Genome locationLG01:70657195..70659230
RNA-Seq ExpressionSed0010689
SyntenySed0010689
Gene Ontology termsGO:0016021 - integral component of membrane (cellular component)
GO:0003723 - RNA binding (molecular function)
InterPro domainsIPR036882 - Alba-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
GAY40135.1 hypothetical protein CUMW_049700 [Citrus unshiu]1.7e-0989.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
KAG2404881.1 uncharacterized protein HKW66_Vig0245280 [Vigna angularis]1.3e-0966.67Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKVFQAVIYFLPEL
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA++LLQ  S     +   AV++ LP L
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKVFQAVIYFLPEL
KDO65896.1 hypothetical protein CISIN_1g023067mg [Citrus sinensis]1.7e-0989.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
KDO65897.1 hypothetical protein CISIN_1g023067mg [Citrus sinensis]1.7e-0989.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
KOM37949.1 hypothetical protein LR48_Vigan03g133100 [Vigna angularis]2.0e-1075.51Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKV
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA++LLQ   S  W+ V
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKV
TrEMBL top hitse value%identityAlignment
A0A067FR09 Alba domain-containing protein8.3e-1089.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
A0A067FRT3 Alba domain-containing protein8.3e-1089.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
A0A0L9U6C3 Uncharacterized protein9.8e-1175.51Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKV
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA++LLQ   S  W+ V
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKV
A0A2H5NKF7 Alba domain-containing protein8.3e-1089.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
V4TTS5 Alba domain-containing protein8.3e-1089.74Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R++KVEKP+PESPINENEIRITTQGAIRNYITYA+TLLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
AT1G20220.1 Alba DNA/RNA-binding protein2.9e-0761.54Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        ++++VEKP+ ++PI ENEIRIT+ G  RNYITYA  LLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
AT1G76010.1 Alba DNA/RNA-binding protein2.2e-0752.83Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKVFQAV
        ++++V KP+ ++PI+ NEIRIT+QG  RNYITYA TLLQ   S +   VF+A+
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKVFQAV
AT3G07030.1 Alba DNA/RNA-binding protein4.8e-1071.79Show/hide
Query:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ
        R+++V KP+PESPINENEIRIT++G IRNYI+YA++LLQ
Subjt:  RHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQ

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGCGAAGAGGCGCGAGGCATCGGAAGGTCGAGAAGCCCGAACCCGAATCTCCCATTAACGAAAACGAGATCCGAATCACCACTCAAGGCGCCATTCGAAACTACATCAC
CTATGCCTCCACACTTCTCCAATTTGCGAGTTCACCTAAGTGGAACAAGGTGTTTCAAGCAGTTATTTACTTCCTGCCGGAGCTGGATATGAAAGAGGCAGAGGTTATGG
CCGTGGACGAGGGCGTACGGGTGGTCGATCGAGGGGCGGCCGTGGAAACTAGGCTTAATCGAAACGTATTCACATTTGTTCTTTGTAAGTACCTCTTACTTGAGATAAAT
TATGTGCTTTGCCTTGGCCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGCGAAGAGGCGCGAGGCATCGGAAGGTCGAGAAGCCCGAACCCGAATCTCCCATTAACGAAAACGAGATCCGAATCACCACTCAAGGCGCCATTCGAAACTACATCAC
CTATGCCTCCACACTTCTCCAATTTGCGAGTTCACCTAAGTGGAACAAGGTGTTTCAAGCAGTTATTTACTTCCTGCCGGAGCTGGATATGAAAGAGGCAGAGGTTATGG
CCGTGGACGAGGGCGTACGGGTGGTCGATCGAGGGGCGGCCGTGGAAACTAGGCTTAATCGAAACGTATTCACATTTGTTCTTTGTAAGTACCTCTTACTTGAGATAAAT
TATGTGCTTTGCCTTGGCCAGTGA
Protein sequenceShow/hide protein sequence
MRRGARHRKVEKPEPESPINENEIRITTQGAIRNYITYASTLLQFASSPKWNKVFQAVIYFLPELDMKEAEVMAVDEGVRVVDRGAAVETRLNRNVFTFVLCKYLLLEIN
YVLCLGQ