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Sed0010705 (gene) of Chayote v1 genome

Gene IDSed0010705
OrganismSechium edule (Chayote v1)
DescriptionZinc finger protein
Genome locationLG03:10166087..10168190
RNA-Seq ExpressionSed0010705
SyntenySed0010705
Gene Ontology termsGO:0046872 - metal ion binding (molecular function)
InterPro domainsIPR001876 - Zinc finger, RanBP2-type
IPR036443 - Zinc finger, RanBP2-type superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6585459.1 Peptidyl-prolyl cis-trans isomerase CYP95, partial [Cucurbita argyrosperma subsp. sororia]1.0e-7083.33Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

KAG7020377.1 SPAC17H9.04c [Cucurbita argyrosperma subsp. argyrosperma]5.2e-7082.1Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSS+FGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECF+CNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

XP_022951649.1 TATA-binding protein-associated factor 2N-like [Cucurbita moschata]8.8e-7082.72Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASN PGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

XP_023002539.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita maxima]1.0e-7083.33Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

XP_023538151.1 uncharacterized RNA-binding protein C17H9.04c-like [Cucurbita pepo subsp. pepo]1.0e-7083.33Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

TrEMBL top hitse value%identityAlignment
A0A0A0LLW7 Uncharacterized protein4.0e-6879.75Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGR------GGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFD
        M+R GDWNCRSCNHLNFQRRD+C RCGDPR DFGGG       GGSSSFGF TGPDVRPGDWYC VANCGAHNFASRSICFKC A+KD+T    +AAA+D
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGR------GGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFD

Query:  ADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
         DL R R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  ADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

A0A1S3BBL4 uncharacterized RNA-binding protein C17H9.04c4.0e-6879.75Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGR------GGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFD
        M+R GDWNCRSCNHLNFQRRD+C RCGDPR DFGGG       GGSSSFGF TGPDVRPGDWYC VANCGAHNFASRSICFKC A+KD+T    +AAA+D
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGR------GGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFD

Query:  ADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
         DL R R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  ADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

A0A6J1GJE4 TATA-binding protein-associated factor 2N-like4.3e-7082.72Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASN PGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

A0A6J1HCG7 uncharacterized RNA-binding protein C17H9.04c-like isoform X12.6e-6778.62Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGP--SAAAAAFDADLS
        M+R GDWNCRSC+HLNFQRR++C RCG+PR DF GGR GSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKDD  P  +AAAAA+D D +
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGP--SAAAAAFDADLS

Query:  RFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        R R  FN+  G ASNRPGWKSGDWIC+RS+CNEHNFA+RRECFRCNAPRD +NT SPYS
Subjt:  RFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

A0A6J1KQR0 uncharacterized RNA-binding protein C17H9.04c-like5.1e-7183.33Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA
        M+R GDWNCRSCNHLNFQRRD+CHRCGDPR DF     GGGRGGSSSFGF TGPDVRPGDWYCAVANCGAHNFASRSICFKC ASKD+    A+AAA+D 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDF-----GGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDA

Query:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
        DLSR R  FN+  GGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD SN+KSPYS
Subjt:  DLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

SwissProt top hitse value%identityAlignment
O13801 Uncharacterized RNA-binding protein C17H9.04c2.2e-0725.29Show/hide
Query:  RAGDWNCRSCNHLNFQRRDTCHRCG----------------DPRLDFGGGRG-GSSSFGFITGPDV----------------------------------
        R GDWNC  C   NFQRR +C RC                  P   +G   G GSS F    G  V                                  
Subjt:  RAGDWNCRSCNHLNFQRRDTCHRCG----------------DPRLDFGGGRG-GSSSFGFITGPDV----------------------------------

Query:  --RPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDADLSRFRAAFNYA------------------------------------GGGAS-
          R GDW C    CG HNFA    C +C AS+      A  A+   + S    ++++                                     GG  S 
Subjt:  --RPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDADLSRFRAAFNYA------------------------------------GGGAS-

Query:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS
                  +RP      GDW+C   +C   NF  R  C RCNAP   SN + P S
Subjt:  ----------NRPG--WKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS

Q27294 RNA-binding protein cabeza1.8e-0446.51Show/hide
Query:  RAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGF
        R GDW C SCN+ NF  R+ C+RC  P+ D  G  GG    G+
Subjt:  RAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGF

Arabidopsis top hitse value%identityAlignment
AT1G70650.1 Ran BP2/NZF zinc finger-like superfamily protein1.5e-0634.67Show/hide
Query:  RAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKC
        + GDW C++CN LNF +   C RC D                  T   + PG+W C   +C   NF   SIC KC
Subjt:  RAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKC

AT2G17975.1 zinc finger (Ran-binding) family protein4.9e-1026.94Show/hide
Query:  RAGDWNCRSCNHLNFQRRDTCHRCGDPR-------LDFGGGRGGSSSFGFITGPDV-----------------------RPGDWYCAVANCGAHNFASRS
        R GDW C  C + N+  R+ C +CG  +       L   G    +    F  GP+                        R GDW C    CG HN++SR 
Subjt:  RAGDWNCRSCNHLNFQRRDTCHRCGDPR-------LDFGGGRGGSSSFGFITGPDV-----------------------RPGDWYCAVANCGAHNFASRS

Query:  ICFKCAASKDDTGP--------SAAAAAFDADLSRFRAAFN--------YAG------GGASN------------RPG--------WKSGDWICARSDCN
         C KC    ++  P        ++ A A + D  R    +         YA       G  SN             P         W+ GDW+C  ++C 
Subjt:  ICFKCAASKDDTGP--------SAAAAAFDADLSRFRAAFN--------YAG------GGASN------------RPG--------WKSGDWICARSDCN

Query:  EHNFASRRECFRCNAPRDI
         HN+ASR EC RC   RDI
Subjt:  EHNFASRRECFRCNAPRDI

AT2G26695.1 Ran BP2/NZF zinc finger-like superfamily protein6.8e-2841.67Show/hide
Query:  GDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDADLSRFRAAF
        GDW C +C H NF++R++C +CG P+  FG   G   S       +V  GDWYC   NCG+HN+ASR+ C++C   K +       A   A         
Subjt:  GDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDADLSRFRAAF

Query:  NYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD
         Y   GA+  PGWK+GDW+C R  C  HN+ASR ECF+C   RD
Subjt:  NYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRD

AT3G15680.1 Ran BP2/NZF zinc finger-like superfamily protein4.7e-5361.76Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPR--------LDFG--GGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAA
        M+R GDWNCRSC+HLNFQRRD+C RCGD R        LDFG  GGR   S+FGF TG DVRPGDWYC V NCG HNFASRS CFKC   KD+TG     
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPR--------LDFG--GGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAA

Query:  ------AAFDADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKS
              A FDAD+ R R        G   R  WKSGDWIC R  CNEHNFASR ECFRCNAPRD SN  S
Subjt:  ------AAFDADLSRFRAAFNYAGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKS

AT5G25490.1 Ran BP2/NZF zinc finger-like superfamily protein1.8e-5259.06Show/hide
Query:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPR--------LDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAA
        MNR GDWNCR C+HLNFQRRD+C RC +PR        L   GGR  SSSFGF TGPDVRPGDWYC + +CG HNFA+RS CFKC A+KD+   S+AAA 
Subjt:  MNRAGDWNCRSCNHLNFQRRDTCHRCGDPR--------LDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAA

Query:  ---FDADLSRFRAAFNY----AGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPY
            D ++   R  F +    +GGG + R  WKSGDWIC RS CNEHNFASR ECFRCNAP++++ T+ PY
Subjt:  ---FDADLSRFRAAFNY----AGGGASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPY


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCGGGCGGGGGATTGGAATTGCAGGTCTTGCAACCACCTCAACTTCCAACGGAGGGACACGTGTCATCGCTGTGGAGATCCCAGGCTTGATTTCGGCGGCGGAAG
AGGCGGCTCTTCCTCCTTTGGGTTCATCACCGGCCCCGACGTCCGCCCTGGGGACTGGTACTGCGCCGTCGCTAACTGCGGCGCCCATAACTTCGCCAGCCGCTCCATCT
GCTTCAAGTGCGCCGCCTCCAAGGACGACACCGGCCCTTCCGCCGCCGCCGCAGCCTTCGACGCCGACTTGTCCAGATTCAGAGCCGCCTTTAACTACGCCGGCGGCGGT
GCCTCCAACCGCCCTGGATGGAAATCTGGCGATTGGATCTGTGCCAGATCGGATTGCAACGAGCATAACTTTGCCAGCCGAAGGGAATGCTTCAGATGCAATGCGCCAAG
GGACATTTCCAACACCAAGTCACCATACTCCTAG
mRNA sequenceShow/hide mRNA sequence
TGGTAGGCTGAAACCTCGATTTTATTCTTCTCGATCCACGAGAAAAAAGAATTTAAAAAAAAAAGAAAGAAAAAAAAAGCCCGGTTCAGCGGTATAAAAACCAGCACCAG
CACCGGGTGTGTTTCACCACAGAAACGTGATCGATCGGTTCATCGTATTACATACAATAGCCGGAGGATGAACCGGGCGGGGGATTGGAATTGCAGGTCTTGCAACCACC
TCAACTTCCAACGGAGGGACACGTGTCATCGCTGTGGAGATCCCAGGCTTGATTTCGGCGGCGGAAGAGGCGGCTCTTCCTCCTTTGGGTTCATCACCGGCCCCGACGTC
CGCCCTGGGGACTGGTACTGCGCCGTCGCTAACTGCGGCGCCCATAACTTCGCCAGCCGCTCCATCTGCTTCAAGTGCGCCGCCTCCAAGGACGACACCGGCCCTTCCGC
CGCCGCCGCAGCCTTCGACGCCGACTTGTCCAGATTCAGAGCCGCCTTTAACTACGCCGGCGGCGGTGCCTCCAACCGCCCTGGATGGAAATCTGGCGATTGGATCTGTG
CCAGATCGGATTGCAACGAGCATAACTTTGCCAGCCGAAGGGAATGCTTCAGATGCAATGCGCCAAGGGACATTTCCAACACCAAGTCACCATACTCCTAGAGGTGGTGC
CAATGGATGCAATAAATTCTAGCTAGAAAGAAGAGGAGTTTCCCATGATATCTAGACGTCGTCGTTTTTTTCTTTTTTTACTTTTTTTTTTCTTCAGTTTGAAAAGTGAT
TTTAAGTGTCTCCTTTTTGAAAGGGGAGCTTTTAATTTGGAAAAGGGTTATGTCTGCATGCATGCAGAAAGACTTTGGTAGTAGCATTTTAATTGAGGCCCCCTCTCTCT
TTGTATCCAATTTTCTAATTTATATTAGTACCCAATCTTTGATATTTTATTTTTTTGGTAACCTTCACTTTATATTTTGTTATGTGTTTGTCTCAAAATAATTCAAAGTG
TGCTTATGTGAA
Protein sequenceShow/hide protein sequence
MNRAGDWNCRSCNHLNFQRRDTCHRCGDPRLDFGGGRGGSSSFGFITGPDVRPGDWYCAVANCGAHNFASRSICFKCAASKDDTGPSAAAAAFDADLSRFRAAFNYAGGG
ASNRPGWKSGDWICARSDCNEHNFASRRECFRCNAPRDISNTKSPYS