| GenBank top hits | e value | %identity | Alignment |
|---|
| XP_004148429.2 RNA polymerase sigma factor sigC isoform X1 [Cucumis sativus] | 6.9e-83 | 42.33 | Show/hide |
Query: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIEGD-----------
M+GTS RPNL+WGFQIQT S+ KGR+A+++SGR SFFSSICEEGESI RETLKTYTCL EAPQTSA D L++EEIE +
Subjt: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIEGD-----------
Query: -------SCVMDNES-------------------------------------------------------------------------------------
S V DN S
Subjt: -------SCVMDNES-------------------------------------------------------------------------------------
Query: ---------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
K AMDNADK+A RLL T+A +E ++FSRKK+ NS KRRLIVA NEAEM S ++VVANLERIRETLEKE ++
Subjt: ---------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
Query: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W-
+C A + LQFG C+D+LLR V+FLAKKYRCSG MEDLVQ +GVLQG+ERFDPKRGFR S W
Subjt: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W-
Query: -------------------SLAKAINQIQKARNVLN-KGRR------------------------------------------------------QETVK
SL KAINQIQKAR VLN GRR +ETVK
Subjt: -------------------SLAKAINQIQKARNVLN-KGRR------------------------------------------------------QETVK
Query: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
KLMKK I N+L+ LESRERQVLVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEE V++LSHY
Subjt: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| XP_008444981.1 PREDICTED: RNA polymerase sigma factor sigC [Cucumis melo] | 2.6e-90 | 43.55 | Show/hide |
Query: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
M+GT RPNLKWGFQIQT S+ KGR+A+++SGR SFFSSICEEGESI RETLKTYTCL EAPQTS +D L++EEIE
Subjt: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
Query: -----------------------------------------------------------------------------------GDSCVMDNE--------
D V D E
Subjt: -----------------------------------------------------------------------------------GDSCVMDNE--------
Query: --------------------SKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
K AMDNADKVA R LAT+A +E + +IFSRKK+ NS KRRL+VARNEAEM S ++VVANLERIRETLEKE ++
Subjt: --------------------SKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
Query: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------
+C A + LQFGW C+D+LLR VLFLAKKYRCSG MEDLVQ +GVLQG+ERFDPKRGFRFS
Subjt: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------
Query: ------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETVK
WSL KAINQIQKAR VLN+G R +ETVK
Subjt: ------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETVK
Query: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
KLMKK I N+L+GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEE V+NLSHY
Subjt: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| XP_022131819.1 RNA polymerase sigma factor sigC isoform X1 [Momordica charantia] | 2.4e-83 | 41.91 | Show/hide |
Query: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
+GTS RPNLKW FQ+QT S KGR+AS++S R SFFS+ICEEGES SRETLKTYTCL EAPQTSA+D LD++EIE
Subjt: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
Query: ----GDSCVMDNES--------------------------------------------------------------------------------------
G S + DN S
Subjt: ----GDSCVMDNES--------------------------------------------------------------------------------------
Query: ----------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK
+ A D ADKVA + AT AA+E F + F RK+ FNSR+RRL+VARNEAEM S ++VVANLERIRETLEKE EK
Subjt: ----------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK
Query: --LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS------
+C A + LQFGW CQ++LLR VLFLAKKYRC+G MEDLVQ +GVLQG+ERFDPKRGFRFS
Subjt: --LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS------
Query: -------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETV
WSL KAINQIQKAR LN G R +ETV
Subjt: -------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETV
Query: KWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
K KLMKK I NLLEGLE RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEE NL HY
Subjt: KWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| XP_022131821.1 RNA polymerase sigma factor sigC isoform X2 [Momordica charantia] | 4.4e-90 | 46.62 | Show/hide |
Query: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
+GTS RPNLKW FQ+QT S KGR+AS++S R SFFS+ICEEGES SRETLKTYTCL EAPQTSA+D LD++EIE
Subjt: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
Query: ----GDSCVMDNES--------------------------------------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAF
G S + DN S + A D ADKVA + AT AA+E F + F RK+ F
Subjt: ----GDSCVMDNES--------------------------------------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAF
Query: NSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK--LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLV
NSR+RRL+VARNEAEM S ++VVANLERIRETLEKE EK +C A + LQFGW CQ++LLR VLFLAKKYRC+G MEDLV
Subjt: NSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK--LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLV
Query: QVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQIQKARNVLNKGRR-----------------
Q +GVLQG+ERFDPKRGFRFS WSL KAINQIQKAR LN G R
Subjt: QVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQIQKARNVLNKGRR-----------------
Query: --------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
+ETVK KLMKK I NLLEGLE RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKK
Subjt: --------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
Query: AMTKLKNEEIVRNLSHY
AMTKLKNEE NL HY
Subjt: AMTKLKNEEIVRNLSHY
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| XP_038884658.1 RNA polymerase sigma factor sigC isoform X1 [Benincasa hispida] | 5.4e-88 | 42.56 | Show/hide |
Query: MLGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
M+GTS RPNLKWGFQIQT S KGR+A+++SGR SFFSSI EEGESISRETLKTYTCL EAPQTSA+D L++EEIE
Subjt: MLGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
Query: ----------------------------------------------------------------------------------------------------
Subjt: ----------------------------------------------------------------------------------------------------
Query: ---------------GDSCVMDNESKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKE
G V + K AMD+ADKV + LAT+AA+E + +I SRKKA NSRKRRLI+ARNEAEM S ++VVANLERIRETLEKE
Subjt: ---------------GDSCVMDNESKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKE
Query: FEKL--QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS---
++ +C A + LQFGW CQD+LLR +LFLA+KYRCSG MEDLVQ ++GVLQG+ERFDPKRGFRFS
Subjt: FEKL--QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS---
Query: ----------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------Q
WSL KAINQIQKAR VLN G R +
Subjt: ----------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------Q
Query: ETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
ETVK KLMKK I N+LEGLESRERQVLVLRYGL+DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKL++EE VRN SHY
Subjt: ETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| TrEMBL top hits | e value | %identity | Alignment |
|---|
| A0A0A0LLW1 Uncharacterized protein | 3.3e-83 | 42.33 | Show/hide |
Query: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIEGD-----------
M+GTS RPNL+WGFQIQT S+ KGR+A+++SGR SFFSSICEEGESI RETLKTYTCL EAPQTSA D L++EEIE +
Subjt: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIEGD-----------
Query: -------SCVMDNES-------------------------------------------------------------------------------------
S V DN S
Subjt: -------SCVMDNES-------------------------------------------------------------------------------------
Query: ---------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
K AMDNADK+A RLL T+A +E ++FSRKK+ NS KRRLIVA NEAEM S ++VVANLERIRETLEKE ++
Subjt: ---------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
Query: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W-
+C A + LQFG C+D+LLR V+FLAKKYRCSG MEDLVQ +GVLQG+ERFDPKRGFR S W
Subjt: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W-
Query: -------------------SLAKAINQIQKARNVLN-KGRR------------------------------------------------------QETVK
SL KAINQIQKAR VLN GRR +ETVK
Subjt: -------------------SLAKAINQIQKARNVLN-KGRR------------------------------------------------------QETVK
Query: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
KLMKK I N+L+ LESRERQVLVLRYGL+DF+PKSLEEIGKLLH+SKEWVRKIEKKAMTKLKNEE V++LSHY
Subjt: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| A0A1S3BBM8 RNA polymerase sigma factor sigC | 1.3e-90 | 43.55 | Show/hide |
Query: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
M+GT RPNLKWGFQIQT S+ KGR+A+++SGR SFFSSICEEGESI RETLKTYTCL EAPQTS +D L++EEIE
Subjt: MLGTSLRPNLKWGFQIQTQSV-----------IKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE-------------
Query: -----------------------------------------------------------------------------------GDSCVMDNE--------
D V D E
Subjt: -----------------------------------------------------------------------------------GDSCVMDNE--------
Query: --------------------SKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
K AMDNADKVA R LAT+A +E + +IFSRKK+ NS KRRL+VARNEAEM S ++VVANLERIRETLEKE ++
Subjt: --------------------SKSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL
Query: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------
+C A + LQFGW C+D+LLR VLFLAKKYRCSG MEDLVQ +GVLQG+ERFDPKRGFRFS
Subjt: --QACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------
Query: ------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETVK
WSL KAINQIQKAR VLN+G R +ETVK
Subjt: ------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETVK
Query: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
KLMKK I N+L+GLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEE V+NLSHY
Subjt: WKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| A0A5A7VCX9 RNA polymerase sigma factor sigC | 7.4e-83 | 42.96 | Show/hide |
Query: QTQSVIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE----------------------------------------
Q + V KGR+A+++SGR SFFSSICEEGESI RETLKTYTCL EAPQTS +D L++EEIE
Subjt: QTQSVIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE----------------------------------------
Query: --------------------------------------------------------GDSCVMDNE----------------------------SKSAMDN
D V D E K AMDN
Subjt: --------------------------------------------------------GDSCVMDNE----------------------------SKSAMDN
Query: ADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL--QACIARS--------MPPLQFGWCC
ADKVA R LAT+A +E + +IFSRKK+ NS KRRL+VARNEAEM S ++VVANLERIRETLEKE ++ +C A + LQFGW C
Subjt: ADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKL--QACIARS--------MPPLQFGWCC
Query: QDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQ
+D+LLR VLFLAKKYRCSG MEDLVQ +GVLQG+ERFDPKRGFRFS WSL KAINQ
Subjt: QDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQ
Query: IQKARNVLNKGRR-------------------------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRY
IQKAR VLN+G R +ETVK +LMKK I N+L+GLESRERQVLVLRY
Subjt: IQKARNVLNKGRR-------------------------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRY
Query: GLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
GLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEE V+NLSHY
Subjt: GLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| A0A6J1BQJ7 RNA polymerase sigma factor sigC isoform X2 | 2.2e-90 | 46.62 | Show/hide |
Query: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
+GTS RPNLKW FQ+QT S KGR+AS++S R SFFS+ICEEGES SRETLKTYTCL EAPQTSA+D LD++EIE
Subjt: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
Query: ----GDSCVMDNES--------------------------------------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAF
G S + DN S + A D ADKVA + AT AA+E F + F RK+ F
Subjt: ----GDSCVMDNES--------------------------------------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAF
Query: NSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK--LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLV
NSR+RRL+VARNEAEM S ++VVANLERIRETLEKE EK +C A + LQFGW CQ++LLR VLFLAKKYRC+G MEDLV
Subjt: NSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK--LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLV
Query: QVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQIQKARNVLNKGRR-----------------
Q +GVLQG+ERFDPKRGFRFS WSL KAINQIQKAR LN G R
Subjt: QVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-------------------------WSLAKAINQIQKARNVLNKGRR-----------------
Query: --------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
+ETVK KLMKK I NLLEGLE RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKK
Subjt: --------------------------------------QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
Query: AMTKLKNEEIVRNLSHY
AMTKLKNEE NL HY
Subjt: AMTKLKNEEIVRNLSHY
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| A0A6J1BRC1 RNA polymerase sigma factor sigC isoform X1 | 1.1e-83 | 41.91 | Show/hide |
Query: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
+GTS RPNLKW FQ+QT S KGR+AS++S R SFFS+ICEEGES SRETLKTYTCL EAPQTSA+D LD++EIE
Subjt: LGTSLRPNLKWGFQIQTQS-----------VIKGRKASYSSGRHSFFSSICEEGESISRETLKTYTCLFEAPQTSAEDQLDVEEIE--------------
Query: ----GDSCVMDNES--------------------------------------------------------------------------------------
G S + DN S
Subjt: ----GDSCVMDNES--------------------------------------------------------------------------------------
Query: ----------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK
+ A D ADKVA + AT AA+E F + F RK+ FNSR+RRL+VARNEAEM S ++VVANLERIRETLEKE EK
Subjt: ----------------------KSAMDNADKVAYRLLATKAAEEIFCTISIFSRKKAFNSRKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEK
Query: --LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS------
+C A + LQFGW CQ++LLR VLFLAKKYRC+G MEDLVQ +GVLQG+ERFDPKRGFRFS
Subjt: --LQACIARSM--------PPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQVYLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS------
Query: -------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETV
WSL KAINQIQKAR LN G R +ETV
Subjt: -------------------WSLAKAINQIQKARNVLNKGRR-------------------------------------------------------QETV
Query: KWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
K KLMKK I NLLEGLE RERQVL LRYGL DFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEE NL HY
Subjt: KWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| SwissProt top hits | e value | %identity | Alignment |
|---|
| O24621 RNA polymerase sigma factor sigC | 8.9e-33 | 35.02 | Show/hide |
Query: RKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKLQ--ACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQV
RK+R ++RNE EM S +++VA++ERIR LE+E K+ +C A + M L +GW C+D+L++ VLFLA+ YR G + EDL+Q
Subjt: RKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKLQ--ACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQV
Query: YLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W--------------------SLAKAINQIQKARNVLNKGR--------------------
G+ VGVLQG ERFD RG++FS W S+ + IN IQKAR L
Subjt: YLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W--------------------SLAKAINQIQKARNVLNKGR--------------------
Query: -------------------------------------RQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
+E V + ++ I +LLEGLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW+RKIE++
Subjt: -------------------------------------RQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
Query: AMTKLKNEEIVRNLSHY
AM KL+++ +L +Y
Subjt: AMTKLKNEEIVRNLSHY
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| P18182 RNA polymerase principal sigma factor HrdA | 9.9e-08 | 39.74 | Show/hide |
Query: ETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
E+ + L+++ + +L L RER+V+ LRYGL D +P++LEEIG+L V++E +R+IE K ++KL++ L Y
Subjt: ETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| P52322 RNA polymerase sigma factor SigA | 5.8e-08 | 44.93 | Show/hide |
Query: QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
++ V L+++ + N+L+ L RER VL LRYGL D + K+LEEIG++ +V++E +R+IE KA+ KL++
Subjt: QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
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| P74565 RNA polymerase sigma factor SigA | 5.8e-08 | 44.93 | Show/hide |
Query: QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
++ V L+++ + N+L+ L RER VL LRYGL D + K+LEEIG++ +V++E +R+IE KA+ KL++
Subjt: QETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKN
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| P9WGI4 RNA polymerase sigma factor SigB | 1.3e-07 | 43.84 | Show/hide |
Query: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
+L+ I ++L L+ RE QV+ LR+GL D QP++L++IGKL +S+E VR+IE+ M+KL++ E L Y
Subjt: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| Arabidopsis top hits | e value | %identity | Alignment |
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| AT1G08540.1 RNApolymerase sigma subunit 2 | 5.9e-08 | 39.73 | Show/hide |
Query: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
+ M++ + +L+ L +RE+QV+ R+G+ D + K+L+EIG+++ VS+E VR+IE A KLKN++ +L Y
Subjt: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| AT2G36990.1 RNApolymerase sigma-subunit F | 4.3e-06 | 36.99 | Show/hide |
Query: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
+LM+ + NLL L +ER+++ LR+G+ + +SL EIG++ +SKE VR++E +A+ +LK L Y
Subjt: KLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| AT3G53920.1 RNApolymerase sigma-subunit C | 6.3e-34 | 35.02 | Show/hide |
Query: RKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKLQ--ACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQV
RK+R ++RNE EM S +++VA++ERIR LE+E K+ +C A + M L +GW C+D+L++ VLFLA+ YR G + EDL+Q
Subjt: RKRRLIVARNEAEMLTVSVSLQVVANLERIRETLEKEFEKLQ--ACIARS--------MPPLQFGWCCQDKLLRR----VLFLAKKYRCSGSSMEDLVQV
Query: YLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W--------------------SLAKAINQIQKARNVLNKGR--------------------
G+ VGVLQG ERFD RG++FS W S+ + IN IQKAR L
Subjt: YLILFYQKPQGHKHTVGVLQGLERFDPKRGFRFS-----W--------------------SLAKAINQIQKARNVLNKGR--------------------
Query: -------------------------------------RQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
+E V + ++ I +LLEGLE RE+QV+VLRYGL D++PKSLEEIGKLL VSKEW+RKIE++
Subjt: -------------------------------------RQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKK
Query: AMTKLKNEEIVRNLSHY
AM KL+++ +L +Y
Subjt: AMTKLKNEEIVRNLSHY
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| AT5G13730.1 sigma factor 4 | 2.9e-07 | 45.68 | Show/hide |
Query: RRQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
R +E VK + MK I LL L +RE +VL L +GL P S EEIGK L +S+E VR+I A+ KL+N V +L Y
Subjt: RRQETVKWKLMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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| AT5G24120.1 sigma factor E | 5.2e-04 | 37.5 | Show/hide |
Query: LMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
L++ + ++L+ L+ +E V+ RYGL ++L EI L++S+E VRK E KA+ KLK++ V L Y
Subjt: LMKKGILNLLEGLESRERQVLVLRYGLMDFQPKSLEEIGKLLHVSKEWVRKIEKKAMTKLKNEEIVRNLSHY
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