CuGenDBv2

Gene ID	Sed0010722
Organism	Sechium edule (Chayote v1)
Description	Rep_fac-A_C domain-containing protein
Genome location	LG05:39363094..39368212
RNA-Seq Expression	Sed0010722
Synteny	Sed0010722
Gene Ontology terms	NA
InterPro domains	IPR012340 - Nucleic acid-binding, OB-fold

Homology

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GenBank top hits

e value

%identity

Alignment

XP_022140388.1 uncharacterized protein LOC111011075 [Momordica charantia]

5.4e-72

86.62

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++C V+A+DH++FCYRVCSICER LPDNPSSSLCKFCNFNAFNP   SSSKRLFRLL+SIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN
        FAAETA+EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAI+RLRELYGNK+
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN

XP_022943427.1 uncharacterized protein LOC111448196 isoform X1 [Cucurbita moschata]

1.6e-68

85.06

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR+L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

XP_022943430.1 uncharacterized protein LOC111448196 isoform X2 [Cucurbita moschata]

1.6e-68

85.06

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR+L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

XP_023512879.1 uncharacterized protein LOC111777484 isoform X3 [Cucurbita pepo subsp. pepo]

1.3e-68

85.71

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FRLL+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

XP_038901726.1 uncharacterized protein LOC120088466 [Benincasa hispida]

2.1e-71

85.99

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LPDNPSSS+CKFCNFNAFNP S SSSKR+FRLL+SIATD+KVQTVICFDRAARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN
        FAAET +EILEGEMFR+TISKPKNGNAQHSR VQ+VPLSS F+PAI RLRELYGNK+
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CNQ4 uncharacterized protein LOC103503028

5.1e-68

85.62

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Query:  KPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF
        KPI+++CAVIA+D+TNFCYRVCSICER LP NPSSSLCKFCNFNAFNP  SSSSKR+FRLL+SIATDK+VQTVICFDR A+VLFGCSADEFFDFAKLHPF
Subjt:  KPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPF

Query:  AAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        AAET +EIL GEMFR+TISKPKNGNAQHSR VQIVPLSS F+PAI+RLRELYG
Subjt:  AAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

A0A6J1CHW5 uncharacterized protein LOC111011075

2.6e-72

86.62

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++C V+A+DH++FCYRVCSICER LPDNPSSSLCKFCNFNAFNP   SSSKRLFRLL+SIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN
        FAAETA+EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAI+RLRELYGNK+
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN

A0A6J1FWW9 uncharacterized protein LOC111448196 isoform X1

7.9e-69

85.06

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR+L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

A0A6J1FXT2 uncharacterized protein LOC111448196 isoform X2

7.9e-69

85.06

Show/hide

Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +KPI+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR+L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

A0A6J1J8M2 uncharacterized protein LOC111483608 isoform X3

8.8e-68

84.42

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Query:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP
        +K I+++CAVIA+DHT+FCYRVCSICER LP NP  SLCKFCNFNAFNP  SSSSKR+FR+L+SIATDKKVQTVICFDR ARVLFGCSADEFFDFAKLHP
Subjt:  EKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDFAKLHP

Query:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG
        FAAE  +EILEGEMFRMTISKPKNGNAQHSR VQ+VPLSS F+PAILRLRELYG
Subjt:  FAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT2G28105.1 CONTAINS InterPro DOMAIN/s: Nucleic acid-binding, OB-fold-like (InterPro:IPR016027), Replication factor A, C-terminal (InterPro:IPR013955); Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).

1.4e-41

54.14

Show/hide

Query:  MEKPISSICAVIAIDHTNFCYRVCSICERPLP-DN---PSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDF
        ME   + +C ++A+D T++CYRVCS C+R LP DN    SSS CKFC         S   K L+R+L+SIATD  V+TVICFDRAA VLFGCSADEFF F
Subjt:  MEKPISSICAVIAIDHTNFCYRVCSICERPLP-DN---PSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIATDKKVQTVICFDRAARVLFGCSADEFFDF

Query:  AKLHPFAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLREL
         KL+P AA   N++ +GEM RMT+++P+N NAQH R   +VPL S  +PAI+ LR++
Subjt:  AKLHPFAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLREL

Sequences

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CDS sequence

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ATGAGAAAAAAAAGGGTCTCTTTTATTCTTTTGATTTTCCCCCCAAAAACCCAACTTTTGGGGAATCTGAACAGTGAGTATCGATTTGAGCGCGGCGGCGTTGTCCAGTT
GCCAGCAACGGAGGCTGCAATGGAAAAGCCAATATCAAGCATTTGCGCAGTGATAGCCATTGATCACACCAATTTCTGTTACAGGGTTTGTTCTATTTGTGAGAGGCCTT
TACCCGATAACCCCTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCAGCTCCTCCTCCTCCTCTAAACGCCTCTTTCGTTTACTTTTGTCAATTGCA
ACGGATAAGAAAGTACAAACTGTAATATGCTTTGACAGGGCTGCAAGGGTTCTGTTTGGTTGCTCTGCTGACGAGTTTTTCGACTTTGCAAAGCTTCATCCTTTTGCTGC
TGAAACTGCAAATGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGCTGTACAAATTGTGCCACTAAGTT
CAAGTTTTCGACCAGCAATTCTGAGACTGAGGGAATTGTATGGGAACAAGAACTAG

mRNA sequence

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ATTTGACATGAGAAAAAAAAGGGTCTCTTTTATTCTTTTGATTTTCCCCCCAAAAACCCAACTTTTGGGGAATCTGAACAGTGAGTATCGATTTGAGCGCGGCGGCGTTG
TCCAGTTGCCAGCAACGGAGGCTGCAATGGAAAAGCCAATATCAAGCATTTGCGCAGTGATAGCCATTGATCACACCAATTTCTGTTACAGGGTTTGTTCTATTTGTGAG
AGGCCTTTACCCGATAACCCCTCTTCTTCTCTCTGCAAATTCTGCAACTTCAACGCCTTCAATCCCAGCTCCTCCTCCTCCTCTAAACGCCTCTTTCGTTTACTTTTGTC
AATTGCAACGGATAAGAAAGTACAAACTGTAATATGCTTTGACAGGGCTGCAAGGGTTCTGTTTGGTTGCTCTGCTGACGAGTTTTTCGACTTTGCAAAGCTTCATCCTT
TTGCTGCTGAAACTGCAAATGAAATTCTGGAGGGAGAGATGTTTAGAATGACGATCTCTAAACCCAAGAATGGCAATGCACAACACTCTAGAGCTGTACAAATTGTGCCA
CTAAGTTCAAGTTTTCGACCAGCAATTCTGAGACTGAGGGAATTGTATGGGAACAAGAACTAGTATAATACTTCAATGGAGCTGCACAGGCTTGTCATTTTATGCATCTG
GACAAAAATTAGCATCAAACTCAAAGCCGTCTAAACCAGTCCGAAAGCTCCATTCTTCTTTGTCATAATGTAAGTAAGTTACCGATGTTATAAATCGAGCTCAATGCAGA
GTCGGGTGAATTTGTCCCTTCAGCTTTTGTTGCTCTTCCTCCCACATTTTGACATTGATTCAAGTCCTGAGACAGTTTAACTTCCAAAACTTGATATATAATCCCTGCAT
ACTGATGTTTTTTGAAACAAGGGTAGCCACGCCCGTCCTTAGGTTAGACATCAGAGATATCAAAAAAGTAATATCACAAGTGAGTTTCGAATTTAGGACCTTGAGGTGAG
CATATCCTTAAATGCCAAGTTTTTAACTACAGCGC

Protein sequence

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MRKKRVSFILLIFPPKTQLLGNLNSEYRFERGGVVQLPATEAAMEKPISSICAVIAIDHTNFCYRVCSICERPLPDNPSSSLCKFCNFNAFNPSSSSSSKRLFRLLLSIA
TDKKVQTVICFDRAARVLFGCSADEFFDFAKLHPFAAETANEILEGEMFRMTISKPKNGNAQHSRAVQIVPLSSSFRPAILRLRELYGNKN

Sed0010722 (gene) of Chayote v1 genome