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Sed0010742 (gene) of Chayote v1 genome

Gene IDSed0010742
OrganismSechium edule (Chayote v1)
Description50S ribosomal protein L20
Genome locationLG05:42451597..42454651
RNA-Seq ExpressionSed0010742
SyntenySed0010742
Gene Ontology termsGO:0000027 - ribosomal large subunit assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005737 - cytoplasm (cellular component)
GO:0005840 - ribosome (cellular component)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0019843 - rRNA binding (molecular function)
InterPro domainsIPR005813 - Ribosomal protein L20
IPR035566 - Ribosomal protein L20, C-terminal


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG7035310.1 rplT, partial [Cucurbita argyrosperma subsp. argyrosperma]6.0e-6195.2Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEP+SFKSLVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKDG S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

XP_004139908.1 uncharacterized protein LOC101216644 [Cucumis sativus]2.3e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD ASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

XP_008456292.1 PREDICTED: 50S ribosomal protein L20 [Cucumis melo]1.3e-6095.2Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD ASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

XP_023007267.1 uncharacterized protein LOC111499805 [Cucurbita maxima]3.0e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSELSMHEP+SFKSLVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKDG S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

XP_023512215.1 uncharacterized protein LOC111777010 [Cucurbita pepo subsp. pepo]3.0e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD  SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

TrEMBL top hitse value%identityAlignment
A0A0A0KD68 50S ribosomal protein L201.1e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSE+SMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD ASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

A0A1S4E159 50S ribosomal protein L206.4e-6195.2Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD ASMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

A0A6J1FUI3 50S ribosomal protein L201.9e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD  SMIV
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

A0A6J1JCG1 50S ribosomal protein L202.4e-6093.6Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KEN+QLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKD  SM+V
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

A0A6J1KY75 50S ribosomal protein L201.4e-6094.4Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK+KIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGL KENIQLNRKVLSELSMHEP+SFKSLVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMIV
        ISRNAFPGNKNVVFPPKKDG S+++
Subjt:  ISRNAFPGNKNVVFPPKKDGASMIV

SwissProt top hitse value%identityAlignment
B6IPJ8 50S ribosomal protein L207.9e-3262.75Show/hide
Query:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR
        +K+ KLAKG+RGR+  C RIA ERVEKAL+Y+YRDRRN+KRD R LWIQRINAG RLHG+ Y  FMHGL +  I+++RKVLS+++  EP SFK+LV+ ++
Subjt:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR

Query:  NA
         A
Subjt:  NA

Q2GHR2 50S ribosomal protein L203.7e-2958.82Show/hide
Query:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR
        +K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  N+ LNRKVL++++++    FK +VD+ +
Subjt:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR

Query:  NA
         A
Subjt:  NA

Q3YSX0 50S ribosomal protein L204.3e-3060.78Show/hide
Query:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR
        +K+ KLAKG+RGR+KNC RIA +RVEKALQY+YRDRRN+KR  RSLWI RINA  R HG+ Y +F+HGL+  NI LNRKVL++++++   +FK +VDI++
Subjt:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR

Query:  NA
         A
Subjt:  NA

Q5FH69 50S ribosomal protein L204.8e-2956.86Show/hide
Query:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR
        +K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++
Subjt:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR

Query:  NA
         A
Subjt:  NA

Q5HC39 50S ribosomal protein L204.8e-2956.86Show/hide
Query:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR
        +K+ KLAKG+RGR+KNC R+A +RVEKALQY+YRDRRN+KR  RSLWI RINA  R +G+ Y +F++GL+  NI LNRK+L+++++H   +FK +VD+++
Subjt:  EKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISR

Query:  NA
         A
Subjt:  NA

Arabidopsis top hitse value%identityAlignment
AT1G16740.1 Ribosomal protein L205.8e-5482.26Show/hide
Query:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD
        MNK++IFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKR+MR LWI+RINAG+R HGVNYGNF+HGL KENIQLNRKVLSELSMHEP+SFK+LVD
Subjt:  MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVD

Query:  ISRNAFPGNKNVVFPPKKDGASMI
        +SR +FPGNKNVV   +K   S I
Subjt:  ISRNAFPGNKNVVFPPKKDGASMI

ATCG00660.1 ribosomal protein L201.1e-0938.2Show/hide
Query:  KEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSELSM
        + K+   A  FRG      R   ++  +AL  ++RDR  +KRD R LWI RINA     GV  +Y  F+H L K+ + LNRK+L+++++
Subjt:  KEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGV--NYGNFMHGLTKENIQLNRKVLSELSM


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACAAGGAAAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGAGCCAAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCGTACAG
GGATCGTCGCAATAAGAAGCGGGATATGCGCTCCCTTTGGATACAACGCATCAATGCTGGCACACGCCTTCATGGGGTAAATTATGGCAATTTCATGCATGGGCTGACGA
AGGAGAACATTCAACTAAACAGGAAAGTGTTATCAGAGCTATCAATGCACGAACCTCACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAG
AATGTAGTGTTTCCCCCAAAGAAGGACGGTGCTTCCATGATTGTTTAA
mRNA sequenceShow/hide mRNA sequence
GAAAAAAGAAAATCCCAAACCCTTTCAGGCTGCTGTGTCGTCTTCTTCTTCCTCCCGCCGTCCACTCCTCACTTTCAGAAGCTCAGTGTTGCCGCCGCCGCCGTCGCCGT
CGCCTCCATTCTTCCAGTGGTGCCTATCGTTGCTGTTGTAGAGCATAGCAAGGAAAAAAATGAACAAGGAAAAGATATTTAAGCTAGCCAAGGGTTTTAGAGGCAGAGCC
AAGAATTGCATAAGGATTGCCAGAGAGCGGGTGGAGAAGGCTCTCCAGTATTCGTACAGGGATCGTCGCAATAAGAAGCGGGATATGCGCTCCCTTTGGATACAACGCAT
CAATGCTGGCACACGCCTTCATGGGGTAAATTATGGCAATTTCATGCATGGGCTGACGAAGGAGAACATTCAACTAAACAGGAAAGTGTTATCAGAGCTATCAATGCACG
AACCTCACAGTTTCAAGTCCCTGGTAGACATCTCTCGAAATGCATTTCCTGGAAACAAGAATGTAGTGTTTCCCCCAAAGAAGGACGGTGCTTCCATGATTGTTTAATGG
ATGATTTAAATGCCCTCTAGATCTCCAGTTACATAGAAACTGACTTGGGATGTTTATCTGGCTTTTGATCATTGAGAGTTGATGCTTGTTGTTGATCTTAATTCTTGTCA
TTTTTATTGTTGCACTAATTCTCCTAGTGTTGTCAGACACTGAAAGGCTTCTCCGTTTGGAATGATAAATAATGTATTGGATGCTTTGGTTTTAAGTCCATAATCAAGGA
TGTTACTTTTTAGTGAAAAGTTTCTGCAGGATGTTCAGTCAAATATGGCCATAGGACAGTGGAGTTGACTTGTCACTAATTTTTGTAGGACTTTCAGTAAAATGTTAACC
ATTATAGGGCAGATCCATTTTATTGGAAAGCTGAAAATTGTATACAGCATATGTACAAGTCAAACATTTGAATGGTCAGCAAACCACATTTCAAACCACTCTTTCTGACT
TTTTTTTTATGGTAGTGAGATTTGAACTTGTAACCTCTTGGTTACTAGGGTATACATCATACCACTGAAACTAAGTTCTTGTTGGCCACTCTTTCTGGACTTCATGCAAC
ATACATATTGGTTATTTGACATGCC
Protein sequenceShow/hide protein sequence
MNKEKIFKLAKGFRGRAKNCIRIARERVEKALQYSYRDRRNKKRDMRSLWIQRINAGTRLHGVNYGNFMHGLTKENIQLNRKVLSELSMHEPHSFKSLVDISRNAFPGNK
NVVFPPKKDGASMIV