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Sed0010745 (gene) of Chayote v1 genome

Gene IDSed0010745
OrganismSechium edule (Chayote v1)
DescriptionTrafficking protein particle complex subunit
Genome locationLG04:46811883..46813722
RNA-Seq ExpressionSed0010745
SyntenySed0010745
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005634 - nucleus (cellular component)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR006722 - Trafficking protein particle complex subunit 2
IPR011012 - Longin-like domain superfamily
IPR044760 - Trafficking protein particle complex subunit 2-like


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6589019.1 Transcription factor ABORTED MICROSPORES, partial [Cucurbita argyrosperma subsp. sororia]8.0e-6287.41Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_004144858.1 trafficking protein particle complex subunit 2-like protein [Cucumis sativus]3.0e-6186.71Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_022136317.1 trafficking protein particle complex subunit 2-like protein [Momordica charantia]4.4e-6083.92Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDV++ERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSA+
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_022928280.1 trafficking protein particle complex subunit 2-like protein [Cucurbita moschata]8.0e-6287.41Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

XP_031127945.1 trafficking protein particle complex subunit 2-like protein [Ipomoea triloba]1.3e-5984.51Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+P+KSG TLNETFLGLL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+RNFFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSA
        RFH AYV+AVSN FHVPGKKITS+TF ESVSTIVKSFG SSA
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSA

TrEMBL top hitse value%identityAlignment
A0A0A0K4Q0 Uncharacterized protein1.5e-6186.71Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A1S3BJH9 trafficking protein particle complex subunit 2-like protein1.5e-6186.71Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1C584 trafficking protein particle complex subunit 2-like protein2.1e-6083.92Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDV++ERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK ++VTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSA+
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1ERA2 Trafficking protein particle complex subunit3.9e-6287.41Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

A0A6J1JPT4 Trafficking protein particle complex subunit3.9e-6287.41Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFTEADDALKLHHI H SLDVVDERVN+PRKSG TLNETFLGLL+PTEN+KV  YLTNT+VK +MVTTDLDVRD D+RNFFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI
        RFH AYV+AVSN FHVPGKKITSKTF ESVSTIVKSFGFSSAI
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFSSAI

SwissProt top hitse value%identityAlignment
A6H7F7 Trafficking protein particle complex subunit 2-like protein4.5e-2341.18Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF
        M VCVAV+  +N PLYI+S    ++ LK H++ H SLDVVDE+++   K+     E +LGLL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ 
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF

Query:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV
        FR+ H +Y + + N F+ PG +I S+ F+  V++++
Subjt:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV

B2RYU6 Trafficking protein particle complex subunit 2-like protein1.2e-2341.18Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF
        M VC+AV+  +N PLYI+S T  ++ LK H++ H SLDVVDE+++   K+     E +LGLL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ 
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF

Query:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV
        FR+ H +Y + + N F+ PG +I S+ F+  V++++
Subjt:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV

Q54CU7 Trafficking protein particle complex subunit 2-like protein4.8e-2543.17Show/hide
Query:  MVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDL-DVRDVDLRN
        +VCVA+VG  NNPL+IQ F+ +   ++ LKLH+I H SLD+++++    +K  S   + +LGLL+PTE++KV  YLTNT++K ++V  D  D++D DL+ 
Subjt:  MVCVAVVGHQNNPLYIQSFTEA---DDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDL-DVRDVDLRN

Query:  FFRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKS
        FF+R    ++N  SN F+ P  K+ SK F + V+ +V S
Subjt:  FFRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKS

Q5M8X5 Trafficking protein particle complex subunit 2-like protein5.3e-2441.91Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF
        M VCVAV+  +N PLYI+S T  ++ LK H+  H SLDVVDE+++   K+     E +LGLL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ 
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF

Query:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV
        FR+ H +Y + + N F+ PG  I S+ F+ +V++++
Subjt:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV

Q9JME7 Trafficking protein particle complex subunit 2-like protein1.5e-2341.18Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF
        M VC+AV+  +N PLYI+S T  +  LK H++ H SLDVVDE+++   K+     E +LGLL+PTE++KV  Y+TN++VK +MV  +++  +RD ++R+ 
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMV--TTDLDVRDVDLRNF

Query:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV
        FR+ H +Y + + N F+ PG +I S+ F+  V++++
Subjt:  FRRFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIV

Arabidopsis top hitse value%identityAlignment
AT2G20930.1 SNARE-like superfamily protein4.9e-5775Show/hide
Query:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR
        M+VCVAVVGHQNNPLYIQSFT+ADDALKLHHI H SLDV++ERVN+P+KSG+TLNE FLGLL+PT N+KV  YLTNT+VK ++VTTDLDVRD D+R+FFR
Subjt:  MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVC-YLTNTRVKVLMVTTDLDVRDVDLRNFFR

Query:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFS
        +FH AYV+AVSN FHVPGKKITS+TF ++VS IV S+G +
Subjt:  RFHGAYVNAVSNLFHVPGKKITSKTFEESVSTIVKSFGFS


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATGGTCTGCGTCGCCGTCGTCGGCCACCAGAACAATCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTTTTCACCGTTCTCT
GGATGTCGTCGACGAGCGAGTGAACCATCCGAGAAAATCTGGATCGACATTGAACGAGACCTTTCTAGGTCTTCTTCACCCGACTGAAAATCACAAAGTATGCTATTTGA
CTAATACCAGAGTGAAGGTTCTTATGGTCACCACAGATCTCGATGTCAGAGATGTCGATTTGAGAAATTTTTTTCGGAGATTTCATGGTGCATATGTGAATGCAGTTTCA
AACCTATTTCATGTGCCGGGTAAGAAAATTACTTCAAAAACTTTTGAAGAAAGTGTGAGCACCATTGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGA
mRNA sequenceShow/hide mRNA sequence
ATGATGGTCTGCGTCGCCGTCGTCGGCCACCAGAACAATCCCCTTTACATTCAAAGCTTCACGGAGGCCGATGATGCTCTCAAGCTCCACCACATTTTTCACCGTTCTCT
GGATGTCGTCGACGAGCGAGTGAACCATCCGAGAAAATCTGGATCGACATTGAACGAGACCTTTCTAGGTCTTCTTCACCCGACTGAAAATCACAAAGTATGCTATTTGA
CTAATACCAGAGTGAAGGTTCTTATGGTCACCACAGATCTCGATGTCAGAGATGTCGATTTGAGAAATTTTTTTCGGAGATTTCATGGTGCATATGTGAATGCAGTTTCA
AACCTATTTCATGTGCCGGGTAAGAAAATTACTTCAAAAACTTTTGAAGAAAGTGTGAGCACCATTGTCAAGTCGTTTGGGTTCAGTTCAGCTATTTGACTGACCAACCA
GGAAACTAGTTCAACCGAACTGAAAACTTTACTGTTGTGTTACTGTCTCTTCTTTCTTGTTTTTTTGGTAGCATTTGAATGATTTTTTCCTCGAGTTGTATTAAATCTAA
GCAAACGGTTGTTGTCTTTTTTTTTTTTTAATAATTAAATAAAAAGCAGTTCTACT
Protein sequenceShow/hide protein sequence
MMVCVAVVGHQNNPLYIQSFTEADDALKLHHIFHRSLDVVDERVNHPRKSGSTLNETFLGLLHPTENHKVCYLTNTRVKVLMVTTDLDVRDVDLRNFFRRFHGAYVNAVS
NLFHVPGKKITSKTFEESVSTIVKSFGFSSAI