CuGenDBv2

Gene ID	Sed0010830
Organism	Sechium edule (Chayote v1)
Description	Mediator of RNA polymerase II transcription subunit 4
Genome location	LG14:4426106..4429502
RNA-Seq Expression	Sed0010830
Synteny	Sed0010830
Gene Ontology terms	GO:0006357 - regulation of transcription by RNA polymerase II (biological process) GO:0016592 - mediator complex (cellular component) GO:0070847 - core mediator complex (cellular component) GO:0003712 - transcription coregulator activity (molecular function)
InterPro domains	IPR019258 - Mediator complex, subunit Med4

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG6595269.1 Mediator of RNA polymerase II transcription subunit 4, partial [Cucurbita argyrosperma subsp. sororia]

2.8e-192

90.44

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKL PSQQSHHQNQ NLSSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQS+PS PLDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDVLFDDYADYQ  KRVK+ +DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL
        E    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Subjt:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL

Query:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVAR+DEPQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

XP_022143910.1 mediator of RNA polymerase II transcription subunit 4 [Momordica charantia]

6.0e-195

89.95

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQI QSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSP PSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQSSPS PLD+TP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVK+++DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA
        E    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLYNFADLDVGLPK+VE TEKTIEPMIE PA VPTDAN LA
Subjt:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA

Query:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        NLA IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPN LPGL +P EPIQVR VQLDILDQDDDSSDY SD
Subjt:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

XP_022963248.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita moschata]

7.3e-193

90.69

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQS+PS PLDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDVLFDDYADYQ  KRVK+ +DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL
        E    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Subjt:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL

Query:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

XP_023518528.1 mediator of RNA polymerase II transcription subunit 4 [Cucurbita pepo subsp. pepo]

4.3e-193

90.44

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ NLSSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQS+PS PLDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDVLFDDYADYQ  KRVK+ +DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E-----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL
        E      STTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY+FADLDVGLPKSVE TEKTIEPMIE PA VPTDAN L
Subjt:  E-----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL

Query:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

XP_038882754.1 mediator of RNA polymerase II transcription subunit 4 [Benincasa hispida]

3.0e-194

88.94

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQ N+SSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
        TSQTQSSPS  LDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDVLFDDYADYQRP+RVK ++D 
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA
        E    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LD+GLPK+VE TEKTIEPMIE PA VPTDAN L+
Subjt:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA

Query:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD
        N+A IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPP+DSLPV RVDEPQLRPN  PGL +P EPIQVRHVQLDILDQDDDSSDY SD+
Subjt:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

TrEMBL top hits

e value

%identity

Alignment

A0A1S3BLP6 Mediator of RNA polymerase II transcription subunit 4

4.8e-190

87.96

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS  PSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
        TSQTQSSPS  LDSTP++ KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDVLFDDYADYQRP+RVK+E   
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA
        E    CSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPK+VE TEKTIEPMIE PA V  DAN L+
Subjt:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA

Query:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD
        N+A IQGLL PNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPN LPGL +P EPIQVRHVQLDILDQDDDSSDY SD+
Subjt:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A5A7TZC1 Mediator of RNA polymerase II transcription subunit 4

4.8e-190

87.96

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQNQ N+SS  PSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
        TSQTQSSPS  LDSTP++ KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDVLFDDYADYQRP+RVK+E   
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA
        E    CSTTVASQL+LSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLYNFA+LDVGLPK+VE TEKTIEPMIE PA V  DAN L+
Subjt:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA

Query:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD
        N+A IQGLL PNITVPSGWKPGMPVELP D+PMPPPGWKPGDPV LPP+DSLPV RVDEPQLRPN LPGL +P EPIQVRHVQLDILDQDDDSSDY SD+
Subjt:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDD

Query:  GSSEDDD
        GSSEDDD
Subjt:  GSSEDDD

A0A6J1CQ51 Mediator of RNA polymerase II transcription subunit 4

2.9e-195

89.95

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQI QSPARL L NPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSP PSSTLLPLLPPLPRAQALLLQMA+LASKLFEVSPNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQSSPS PLD+TP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEI+AKDAALRAFANKLKDAEQVLDVLFDDYADY+RP+RVK+++DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA
        E    CSTTVASQLKLSDILSYAH+ISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLYNFADLDVGLPK+VE TEKTIEPMIE PA VPTDAN LA
Subjt:  E----CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLA

Query:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        NLA IQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPV RVDEP QLRPN LPGL +P EPIQVR VQLDILDQDDDSSDY SD
Subjt:  NLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEP-QLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

A0A6J1HH73 Mediator of RNA polymerase II transcription subunit 4

3.5e-193

90.69

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPSIQNPTPPKLPPSQQSHHQN  NLSSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQS+PS PLDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDVLFDDYADYQ  KRVK+ +DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL
        E    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Subjt:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL

Query:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

A0A6J1I9F9 Mediator of RNA polymerase II transcription subunit 4

1.3e-192

90.44

Show/hide

Query:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL
        MLQHQIVQSPARL LTNPNSPS QNPTPPKLPPSQQSHHQ Q NLSSP PSSTLLPLLPPLPRAQALLLQMASLASKLFEV PNR LWLT FRGSLPTFL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFL

Query:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV
         SQTQS+PS PLDSTP+T KEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYE++AKDAALRAFANKLKDAEQVLDVLFDDYADYQ  KRVK+ +DV
Subjt:  TSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDV

Query:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL
        E    CS TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQ+RASQLY+FADLDVGLPKSVE TEKTIEPMIEAPA VPTDAN L
Subjt:  E----CS-TTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSL

Query:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD
        A LAGIQGLL PNITVPSGWKPGMPVELPRD+PMPPPGWKPGDPVPLPPLDSLPVARVDEPQLR N LPGL RP EPIQVRHVQLDILDQDDDSSDYAS+
Subjt:  ANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASD

Query:  DGSSEDDD
        +GSSEDDD
Subjt:  DGSSEDDD

SwissProt top hits

e value

%identity

Alignment

Q54D00 Putative mediator of RNA polymerase II transcription subunit 4

7.5e-07

29.76

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Query:  LTSQTQSSPSMPLD--STPATPKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLD---------------
        L SQ      +P+D  S  ATP  +L L N L    ++++  + +L++   +Q    +I  EI+ KD  +   A  LKD E  L+               
Subjt:  LTSQTQSSPSMPLD--STPATPKEILSLFNVL--QTQLFE-AVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLD---------------

Query:  ---VLFDDYADYQRPKRVKSEEDVECSTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQLRASQL-----------YNFADL
           ++ +   D ++P    S +++     V  ++   D++SYAHKIS TT AP  FG    APL     PPAPQ+E +R+S L           Y  A++
Subjt:  ---VLFDDYADYQRPKRVKSEEDVECSTTVASQLKLSDILSYAHKISYTTFAPPEFG-AGQAPLRGAL-PPAPQEEQLRASQL-----------YNFADL

Query:  DVGLP
        DV  P
Subjt:  DVGLP

Q9LZ00 Mediator of RNA polymerase II transcription subunit 4

6.1e-134

64.75

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Query:  MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARL LT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVL
        F+VSPNR +WL+ FRGSLP+FL+S +   P    + +P++ KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EIK+KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS
        D+L DDY+DY++PKR K EED E         STTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK+
Subjt:  DVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS

Query:  VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRP
        VE  EK +E +IE P   P +A    +++ I  LL PNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GL RP
Subjt:  VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRP

Query:  SEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD
         + IQVR VQLDIL +DDDSSDY+SDD SS+D+D
Subjt:  SEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD

Arabidopsis top hits

e value

%identity

Alignment

AT5G02850.1 hydroxyproline-rich glycoprotein family protein

4.3e-135

64.75

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Query:  MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKL
        MLQHQIVQSPARL LT P SPS+QNPTP     P    S QS H   Q QPNL              S+   SS LL LLPPLPRAQALL QMA L SKL
Subjt:  MLQHQIVQSPARLALTNPNSPSIQNPTP-----PKLPPSQQSHH---QNQPNL--------------SSPAPSSTLLPLLPPLPRAQALLLQMASLASKL

Query:  FEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVL
        F+VSPNR +WL+ FRGSLP+FL+S +   P    + +P++ KEILS FN LQTQLFEAV ELQEILDLQD+KQK+A EIK+KD++L AFANKLKDAE+VL
Subjt:  FEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSMPLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVL

Query:  DVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS
        D+L DDY+DY++PKR K EED E         STTV+SQLKL DIL+YAHKISYTTFAPPEFGAGQAPLRGALPPAPQ+EQ+RASQLY FADLD+GLPK+
Subjt:  DVLFDDYADYQRPKRVKSEEDVE--------CSTTVASQLKLSDILSYAHKISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKS

Query:  VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRP
        VE  EK +E +IE P   P +A    +++ I  LL PNI VPSGWKPGMPVELPRD+P+PPPGWKPGDPV LPPL+S+   R ++ Q +RP+   GL RP
Subjt:  VEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMPPPGWKPGDPVPLPPLDSLPVARVDEPQ-LRPNVLPGLLRP

Query:  SEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD
         + IQVR VQLDIL +DDDSSDY+SDD SS+D+D
Subjt:  SEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD

Sequences

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CDS sequence

Show/hide CDS sequence

ATGCTTCAACATCAAATCGTTCAATCCCCAGCCAGATTAGCATTAACAAACCCTAATTCCCCTTCAATTCAAAACCCTACCCCTCCAAAATTGCCCCCATCTCAACAATC
CCATCACCAAAACCAACCAAATCTCTCTTCTCCGGCCCCATCCTCAACCCTTCTCCCACTCCTCCCACCTCTCCCCAGAGCTCAAGCTCTTCTCCTTCAAATGGCGTCTT
TAGCTTCCAAGCTCTTCGAAGTTTCCCCCAATCGACCCCTTTGGCTCACCACATTCCGGGGTTCTCTTCCCACTTTTCTAACCTCTCAAACCCAATCCTCCCCTTCAATG
CCGCTCGATTCTACGCCGGCCACGCCGAAAGAGATTCTGTCTTTGTTTAATGTTTTGCAGACCCAGTTGTTTGAAGCGGTTGCTGAGCTTCAGGAGATTCTTGATCTTCA
AGACTCGAAGCAGAAGATTGCTTATGAGATAAAGGCGAAGGACGCCGCGCTTCGTGCTTTCGCTAATAAACTTAAGGATGCCGAGCAGGTACTTGATGTTTTGTTTGATG
ATTATGCTGATTATCAGCGTCCCAAGAGGGTTAAATCCGAGGAGGATGTCGAATGTTCGACTACGGTTGCGTCCCAGTTGAAATTGTCTGATATATTGTCGTATGCTCAT
AAGATTAGCTATACTACTTTTGCGCCGCCGGAATTTGGGGCGGGACAAGCTCCGTTACGTGGCGCACTTCCTCCCGCCCCGCAAGAAGAGCAATTGCGTGCTTCCCAGCT
GTATAATTTCGCTGATCTTGATGTTGGGTTGCCTAAATCAGTTGAAATTACTGAGAAAACTATTGAGCCAATGATTGAGGCTCCAGCTTTGGTTCCAACTGATGCCAATT
CTCTTGCTAATTTGGCTGGTATTCAAGGTTTGCTTCACCCAAATATCACTGTGCCATCTGGGTGGAAACCTGGAATGCCTGTGGAGTTGCCTAGGGATATCCCCATGCCC
CCACCTGGATGGAAGCCTGGGGACCCTGTGCCGTTACCCCCATTGGACTCTCTTCCGGTTGCTAGAGTGGACGAGCCGCAATTGAGGCCGAATGTTCTTCCAGGATTACT
CAGACCGTCTGAGCCAATTCAAGTTAGGCATGTTCAGTTGGATATTCTCGATCAAGATGATGATAGTAGTGATTATGCTAGCGACGATGGAAGCTCTGAAGATGATGATT
GA

mRNA sequence

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GTAGTGCCTAATTAACAAGATTAAAAAAAAAAACAAGGTTTTCGACCGCCAGCTCAGTGGCGCTGAATCATCGATCTTCTCTTTCATCCTTCGATCTCAAGTTCTCTCAT
TTCCTTTTCTTCTTCTTCTTCTTCTGCGTTTTCTGTAACAATAAAACCCTAATTCGACCTCCATTGAAGCTCACAACCATGCTTCAACATCAAATCGTTCAATCCCCAGC
CAGATTAGCATTAACAAACCCTAATTCCCCTTCAATTCAAAACCCTACCCCTCCAAAATTGCCCCCATCTCAACAATCCCATCACCAAAACCAACCAAATCTCTCTTCTC
CGGCCCCATCCTCAACCCTTCTCCCACTCCTCCCACCTCTCCCCAGAGCTCAAGCTCTTCTCCTTCAAATGGCGTCTTTAGCTTCCAAGCTCTTCGAAGTTTCCCCCAAT
CGACCCCTTTGGCTCACCACATTCCGGGGTTCTCTTCCCACTTTTCTAACCTCTCAAACCCAATCCTCCCCTTCAATGCCGCTCGATTCTACGCCGGCCACGCCGAAAGA
GATTCTGTCTTTGTTTAATGTTTTGCAGACCCAGTTGTTTGAAGCGGTTGCTGAGCTTCAGGAGATTCTTGATCTTCAAGACTCGAAGCAGAAGATTGCTTATGAGATAA
AGGCGAAGGACGCCGCGCTTCGTGCTTTCGCTAATAAACTTAAGGATGCCGAGCAGGTACTTGATGTTTTGTTTGATGATTATGCTGATTATCAGCGTCCCAAGAGGGTT
AAATCCGAGGAGGATGTCGAATGTTCGACTACGGTTGCGTCCCAGTTGAAATTGTCTGATATATTGTCGTATGCTCATAAGATTAGCTATACTACTTTTGCGCCGCCGGA
ATTTGGGGCGGGACAAGCTCCGTTACGTGGCGCACTTCCTCCCGCCCCGCAAGAAGAGCAATTGCGTGCTTCCCAGCTGTATAATTTCGCTGATCTTGATGTTGGGTTGC
CTAAATCAGTTGAAATTACTGAGAAAACTATTGAGCCAATGATTGAGGCTCCAGCTTTGGTTCCAACTGATGCCAATTCTCTTGCTAATTTGGCTGGTATTCAAGGTTTG
CTTCACCCAAATATCACTGTGCCATCTGGGTGGAAACCTGGAATGCCTGTGGAGTTGCCTAGGGATATCCCCATGCCCCCACCTGGATGGAAGCCTGGGGACCCTGTGCC
GTTACCCCCATTGGACTCTCTTCCGGTTGCTAGAGTGGACGAGCCGCAATTGAGGCCGAATGTTCTTCCAGGATTACTCAGACCGTCTGAGCCAATTCAAGTTAGGCATG
TTCAGTTGGATATTCTCGATCAAGATGATGATAGTAGTGATTATGCTAGCGACGATGGAAGCTCTGAAGATGATGATTGAGGAAATCGGCCTGGATTTCCAGCTAAGGCA
CTGGGATACGATCATACGACCCCTTAGTGACAGAAGGGGCGTGGGTGTAGAGACAATCAAAGGTTGCTGATTTGCTTAGAAGCAGTGACCCTTAATGAGTATGTAATGAT
CTCTTCATATGAATGCCTGAGGTTATATTTCGTACTTTCTAGGTTACATGTTACTGATGATGTGTTGTGTGCATTCATAGGGTTAACTTTGAACACAAATCTTTTCAACT
TTTTAATAAGCTGTAACTTGAGTTCTTTTGCACGTTTTTGTTGATACCGAATGCATTTTAAACCTGAGTAAAGAGTGCCCTAAGACTCCTAACTTAATACCATGTCGTAG
AGTCAGTGCTTTATAAGCTTCTATAGGCTGTTGAACCAATTAGTGACTATTATGATTGGAAGGCAACTGATTAGATTATTTTATGTTGGTGGCATTTAAAGATAAATCTT
GAGCATAGTATAAGTTTTGATGAGATTCTGAATAATATGACCTGGTACTTGTGAAAGAGTGTGTTTCCAAATGAATATTGCTGTTGTCGAATATTTTGCTCATTTGCTGA
AGAACATGTAAGGCCCTCGATAGTGCATACCTATGCAAGGAAAGGTAAGAAGATAGTGGAAGAAGAGAATGAGGTCGAAAAGGGACCACCTAACTTTCGTACCTACGAAA
GGAAAAGGGGTCAGGAAGCAGAGCAGGGGATCGTGGGCAGTAATGGTCATTGGGGCCGTACCAGGGAATAAGGATTCAAATAGGGCCATCCATTGAAGGGGCCATTTTGT
GCAGTTTCTAGAGAGCTTGAAGAGCAAGTCAGGAGAGACCACCACCCTCTCGAATTGGCGGGGAGCTTCTTGTTATCTTGTTCTTATTTTGGTTCTAGTATAGTTATCTA
CCTTTCAGTTTATTGTAAGCTAACTATCCTTATCCTGGTTATCAATATAAGTTCTCTGGTTGTTATCTTCCTTGTGCGTGTGGAGGTTGCGTGTGTTTTTGCAGGTTGGG
AGCTGGATACCAAACAGAACAGTTGTACAGAAGATGAAGCTTTAGGAACTTTTTGAATAGCTATATTGCCAAGTATTTTCTGACATCCTTGGCTATTTTAGAAGAGGCTT
CAGATTCTGAAGTTTTGAAGCAGCTGGAAGATGTGAACTTAAATATTTATGAGATCCATGAAATAAGTGTAAAGATGGTTGGTTGAAGAGAGAAAAAACTCAAGGACCAA
TAAGACCAAGAGGAATCTCTAACTTTTTCTCTTCTAAACTCTCCCAACCAAAAGTAACCCTAGCAAGAAGCCCATGCGGCTCTTCTTCCTCCGAAGTAGGGAGGATGGAG
GGATACCACGGTTCTTCATCGGCTTTGCAACCGCACCACCCTTTTTCTGGGAGACCGATCTTCTCCGACTCGCACCACCCTTCATCTTTGGTGTGTTTCCCCTTTCCTGC
GACTCGGGTGAACGCCGACGAAGTTTCTCCTTCAGTCAAACCAAATACAAATATATATCATACACACCCCTTTAATGCAGCAGACTTTATCAAGGTTTTCCCCTTGACGT
GTCATCGATAAGACATCGATGAGGTCCCTTATTGGTGTTTCGCACTTGGTCGAGACATCACAACAACTCCTTGGTCGCAGGTCCATGTCTATTTCGGTACGATCTAGGAC
AAAGACACCATGAGCTCGTGTTTCGACAAAACCACTTTTCACATTGGAGAGGCACCATCAGTGCCTCAATAACTCAAATCTGACTTGCAGCGTGGTTGGGCAAAAAAACT
CGAGCTGTACACACATCATCATCGACTCTTCTTTGGAAATATTGACCTACAAGTCCAGCCAGCAACCAACTTAACTGTCTTTTTGTATTTCCTATCGTTTACATGCTGGA
TTATATCCTTTGTTTTTTAATTTGTTGGACCATTGTTTTCGACTTTCACCATTGCTGGATTATCAATGTTTCCACAGACATTGTCCAACACTTCCAC

Protein sequence

Show/hide protein sequence

MLQHQIVQSPARLALTNPNSPSIQNPTPPKLPPSQQSHHQNQPNLSSPAPSSTLLPLLPPLPRAQALLLQMASLASKLFEVSPNRPLWLTTFRGSLPTFLTSQTQSSPSM
PLDSTPATPKEILSLFNVLQTQLFEAVAELQEILDLQDSKQKIAYEIKAKDAALRAFANKLKDAEQVLDVLFDDYADYQRPKRVKSEEDVECSTTVASQLKLSDILSYAH
KISYTTFAPPEFGAGQAPLRGALPPAPQEEQLRASQLYNFADLDVGLPKSVEITEKTIEPMIEAPALVPTDANSLANLAGIQGLLHPNITVPSGWKPGMPVELPRDIPMP
PPGWKPGDPVPLPPLDSLPVARVDEPQLRPNVLPGLLRPSEPIQVRHVQLDILDQDDDSSDYASDDGSSEDDD

Sed0010830 (gene) of Chayote v1 genome