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Sed0010872 (gene) of Chayote v1 genome

Gene IDSed0010872
OrganismSechium edule (Chayote v1)
DescriptionRING-type domain-containing protein
Genome locationLG07:27915722..27916315
RNA-Seq ExpressionSed0010872
SyntenySed0010872
Gene Ontology termsGO:0016020 - membrane (cellular component)
InterPro domainsIPR001841 - Zinc finger, RING-type
IPR013083 - Zinc finger, RING/FYVE/PHD-type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAA0060638.1 putative RING-H2 finger protein ATL19 [Cucumis melo var. makuwa]8.0e-6065.66Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T+LD    +LEAG  NEN        ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEK
        +E+SESN W E +E T+         ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ WLKK++TCPICRCSIVN+K
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEK

KAG6577373.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]2.6e-5063.59Show/hide
Query:  PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSE
        P  NPPPSILPFLT+FSI+ILIF+SIIIFSVLAS +IIV +Y  C+YL+  T LD  DP L A  RN+N    T+T IL SH  R GG+VE +    W E
Subjt:  PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSE

Query:  ALEITMAERKRLKERILER-TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSI
         L     ERK L+E+ L++ T + VSYGSSEA AK +DCAICLEDFE GELCQIFP+C HIFHY CIQ WLKK++TCPICRCSI
Subjt:  ALEITMAERKRLKERILER-TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSI

KAG6600727.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. sororia]5.9e-5564.58Show/hide
Query:  MIPQAL-TVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQTMILGSHQMRDGGNVEQS
        MIPQAL TVPQSNPPPS LPFLTAFSIVI+I ISI+IFS+LAS SII+FI+V CQYLIG TNLDG   ++EAG RN+N         +  MR    V + 
Subjt:  MIPQAL-TVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQTMILGSHQMRDGGNVEQS

Query:  ESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVN
        ESN+W EALE TMAERK  + +I+ + A  V YG SE AAK  DCAICLE+FENGE CQIF +CKHIFHYSCIQ WL++++TCPICR  I N
Subjt:  ESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVN

KAG7027690.1 putative RING-H2 finger protein ATL19, partial [Cucurbita argyrosperma subsp. argyrosperma]8.8e-5162.43Show/hide
Query:  PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSE
        P  NPPPSILPFLT+FSI+ILIF+SIIIFSVLAS +IIV +Y  C+YL+  T LD  DP L A  RN+N    T+T IL SH  R GG+VE +    W E
Subjt:  PQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNEN--PITQTMILGSHQMRDGGNVEQSESNVWSE

Query:  ALEITMAERKRLKERILER-TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKG
         L     ERK L+E+ LE+ T + VSYGSSEA AK +DCAICLEDFE GELCQIFP+C HIFHY CIQ WLKK++TCPIC  SI+ E G
Subjt:  ALEITMAERKRLKERILER-TAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKG

XP_011652743.1 uncharacterized protein LOC105435076 [Cucumis sativus]8.9e-4344.77Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFI+IIIFSV+AS +IIV IYV C+YLIG T+LDG   NLEAG  NEN +  T   ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQ-------------------------------------
        +E+SESN W E +E T+         ++E+ A  VSYGSSEAA KCIDCAICLEDFENGELCQ                                     
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQ-------------------------------------

Query:  ----------------------------------------------IFPLCKHIFHYSCIQLWLKKSLTCPICRCSI
                                                      +FP CKHIFH  CI  WL+ + TCPICR  +
Subjt:  ----------------------------------------------IFPLCKHIFHYSCIQLWLKKSLTCPICRCSI

TrEMBL top hitse value%identityAlignment
A0A0A0L6M6 RING-type domain-containing protein6.0e-6167.51Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFI+IIIFSV+AS +IIV IYV C+YLIG T+LDG   NLEAG  NEN +  T   ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQT---MILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNE
        +E+SESN W E +E T+         ++E+ A  VSYGSSEAA KCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ WLKK++TCPICRCSIVN+
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNE

A0A5A7UZF7 Putative RING-H2 finger protein ATL193.9e-6065.66Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T+LD    +LEAG  NEN        ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEK
        +E+SESN W E +E T+         ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+C HIFHYSCIQ WLKK++TCPICRCSIVN+K
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEK

A0A5D3BTV2 Putative RING-H2 finger protein ATL192.4e-4162.28Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T+LD    +LEAG  NEN        ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL
        +E+SESN W E +E T+         ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FP+
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL

A0A7N2L6L4 RING-type domain-containing protein5.4e-2237Show/hide
Query:  MIPQALTVPQSNPPP--SILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGAR-----NENPITQTMILGSHQMRDG
        M+PQA   P   PPP   IL F+    I IL ++ II+ SV+  + I++ I   C  L  + + + P  +LE G R      + P +   IL        
Subjt:  MIPQALTVPQSNPPP--SILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGAR-----NENPITQTMILGSHQMRDG

Query:  GNVEQSESNVWSE---ALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV
                 +W+     +E  +   KR K++ LE+    V+YGS E A+ C  C ICLEDF+NG+ CQ+FP C H+FH +CI  WLKKS TCPICR  ++
Subjt:  GNVEQSESNVWSE---ALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV

E5GBS2 Uncharacterized protein1.1e-4162.87Show/hide
Query:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--
        MIPQALTVPQSNPPPSILPFLTAFSIVI+IFISIIIFSV+AS +II+FIY+ C+YLIG T+LD    +LEAG  NEN        ++L  HQ    G   
Subjt:  MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENP---ITQTMILGSHQMRDGGN--

Query:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL
        +E+SESN W E +E T+         ++E+ A  VSYGSSE  AKCIDCAICLEDFENGELCQ FPL
Subjt:  VEQSESNVWSEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPL

SwissProt top hitse value%identityAlignment
Q67YI6 RING-H2 finger protein ATL654.2e-1145.76Show/hide
Query:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL
        +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Subjt:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL

Q86XS8 E3 ubiquitin-protein ligase RNF1303.5e-1036.36Show/hide
Query:  KERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL
        K+ I + T  TV  G  E       CA+C+E ++  ++ +I P CKH+FH SC+  WL +  TCP+C+ +I+   G+
Subjt:  KERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL

Q9C7I1 RING-H2 finger protein ATL341.2e-1047.27Show/hide
Query:  IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD
        ++CAICL +FE+ E  ++ P C H FH SCI +WL    TCP+CR S+  + G D
Subjt:  IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD

Q9LZV8 RING-H2 finger protein ATL741.1e-1141.86Show/hide
Query:  SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV
        S A   T+A+R  LK+R L++  +   YGS E      +CAICL +F +GE  ++ P C H FH SCI  WL    +CP CR S++
Subjt:  SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV

Q9SJJ7 RING-H2 finger protein ATL573.5e-1044.64Show/hide
Query:  DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL
        DC ICL DFE GE  ++ P C H+FH  C+  WL   +TCP+CR + + ++K L +
Subjt:  DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL

Arabidopsis top hitse value%identityAlignment
AT1G35330.1 RING/U-box superfamily protein8.6e-1247.27Show/hide
Query:  IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD
        ++CAICL +FE+ E  ++ P C H FH SCI +WL    TCP+CR S+  + G D
Subjt:  IDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLD

AT2G27940.1 RING/U-box superfamily protein2.5e-1144.64Show/hide
Query:  DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL
        DC ICL DFE GE  ++ P C H+FH  C+  WL   +TCP+CR + + ++K L +
Subjt:  DCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCS-IVNEKGLDL

AT3G18930.1 RING/U-box superfamily protein3.0e-1245.76Show/hide
Query:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL
        +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Subjt:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL

AT3G18930.2 RING/U-box superfamily protein3.0e-1245.76Show/hide
Query:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL
        +AA C DCA+CL +FE G+  +  PLC H FH  CI  WL+    CP+CR +I+   G+
Subjt:  AAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGL

AT5G01880.1 RING/U-box superfamily protein7.8e-1341.86Show/hide
Query:  SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV
        S A   T+A+R  LK+R L++  +   YGS E      +CAICL +F +GE  ++ P C H FH SCI  WL    +CP CR S++
Subjt:  SEALEITMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGATCCCTCAGGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCAATCCTTCCCTTCCTCACCGCGTTTTCAATTGTAATCCTCATCTTCATCTCCATCATCATCTT
CTCCGTCCTCGCCTCTATTTCCATTATCGTCTTCATCTACGTCTTTTGCCAATACCTAATTGGCTTGACGAACTTAGATGGGCCCGATCCCAACCTCGAAGCAGGCGCTA
GAAACGAAAACCCTATCACACAGACTATGATTTTAGGATCTCATCAAATGCGTGATGGTGGCAATGTGGAGCAGTCTGAAAGCAACGTATGGAGTGAGGCTTTAGAAATA
ACCATGGCGGAGAGGAAGAGGCTGAAAGAACGAATTCTAGAGAGAACGGCGATGACGGTGAGCTATGGCAGCTCCGAAGCTGCGGCGAAATGCATTGATTGTGCAATCTG
TTTGGAGGATTTTGAAAATGGAGAACTTTGCCAGATTTTTCCACTGTGTAAACACATTTTTCATTACTCTTGCATTCAACTTTGGTTGAAGAAGAGCCTGACTTGTCCCA
TTTGTCGTTGTTCTATTGTGAATGAAAAGGGATTAGATTTGTAA
mRNA sequenceShow/hide mRNA sequence
ATGATCCCTCAGGCTCTTACTGTTCCACAATCCAACCCTCCTCCTTCAATCCTTCCCTTCCTCACCGCGTTTTCAATTGTAATCCTCATCTTCATCTCCATCATCATCTT
CTCCGTCCTCGCCTCTATTTCCATTATCGTCTTCATCTACGTCTTTTGCCAATACCTAATTGGCTTGACGAACTTAGATGGGCCCGATCCCAACCTCGAAGCAGGCGCTA
GAAACGAAAACCCTATCACACAGACTATGATTTTAGGATCTCATCAAATGCGTGATGGTGGCAATGTGGAGCAGTCTGAAAGCAACGTATGGAGTGAGGCTTTAGAAATA
ACCATGGCGGAGAGGAAGAGGCTGAAAGAACGAATTCTAGAGAGAACGGCGATGACGGTGAGCTATGGCAGCTCCGAAGCTGCGGCGAAATGCATTGATTGTGCAATCTG
TTTGGAGGATTTTGAAAATGGAGAACTTTGCCAGATTTTTCCACTGTGTAAACACATTTTTCATTACTCTTGCATTCAACTTTGGTTGAAGAAGAGCCTGACTTGTCCCA
TTTGTCGTTGTTCTATTGTGAATGAAAAGGGATTAGATTTGTAA
Protein sequenceShow/hide protein sequence
MIPQALTVPQSNPPPSILPFLTAFSIVILIFISIIIFSVLASISIIVFIYVFCQYLIGLTNLDGPDPNLEAGARNENPITQTMILGSHQMRDGGNVEQSESNVWSEALEI
TMAERKRLKERILERTAMTVSYGSSEAAAKCIDCAICLEDFENGELCQIFPLCKHIFHYSCIQLWLKKSLTCPICRCSIVNEKGLDL