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Sed0010888 (gene) of Chayote v1 genome

Gene IDSed0010888
OrganismSechium edule (Chayote v1)
DescriptionRNase H domain-containing protein
Genome locationLG10:7566847..7573359
RNA-Seq ExpressionSed0010888
SyntenySed0010888
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
MBA0819390.1 hypothetical protein [Gossypium harknessii]9.3e-0533.7Show/hide
Query:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFP
        +A +H +    +MG ++V VE DS+ +++ +Q+G L  S  G  + EIR +  N  ++ F    RESN VAH +A+     G S  W  + P
Subjt:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFP

XP_021748164.1 uncharacterized protein LOC110714013 [Chenopodium quinoa]2.9e-0631.18Show/hide
Query:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFPL
        +A+ H L+IV+E G +E+ +E+D+ +L   +Q+GC+  + +G ++ ++  +++    + FSF++++ N VA +LA+ +C    S VW   +PL
Subjt:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFPL

XP_021774242.1 uncharacterized protein LOC110738174 [Chenopodium quinoa]9.3e-0534.44Show/hide
Query:  LIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIR-ESNSVAHQLAQWACFSGLSLVWTLDFP
        ++ G+   +EMG K V VESD  QL+ A+++G    SN+  +L ++  L  +  F+ +SF++   N VAH LA +  +     VW  D P
Subjt:  LIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIR-ESNSVAHQLAQWACFSGLSLVWTLDFP

XP_021840770.1 uncharacterized protein LOC110780758, partial [Spinacia oleracea]1.2e-0437.36Show/hide
Query:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFP
        A++ GLK+ +EMG ++V VE D   +V A+Q G   +S+   +L +IRD       + F F++ S N VAH LA +  +     VW  DFP
Subjt:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFP

XP_021867343.1 uncharacterized protein LOC110806015 [Spinacia oleracea]9.3e-0537.36Show/hide
Query:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFP
        A + GL++  E+GL+ + +ESD   LV A+QRG    SN+  +L +I DL  +   + FSF++ S N VAH LA    +      W  +FP
Subjt:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRES-NSVAHQLAQWACFSGLSLVWTLDFP

TrEMBL top hitse value%identityAlignment
A0A1Q3DB78 RVT_3 domain-containing protein (Fragment)2.9e-0433.66Show/hide
Query:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFPLWTSYVKR
        MA++H LK+ LE G +++ VESD++ ++  I       S YG ++ EI+ L+    F  FS+I +  N +AH+LA+ A     ++VW   F L    +K 
Subjt:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFPLWTSYVKR

Query:  I
        +
Subjt:  I

A0A1R3GAU4 RNase H domain-containing protein1.7e-0437.18Show/hide
Query:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWAC
        A+ HG+K   +MG+  V +ESDS   VLAI++G  ++     L++ I++ L N +     +I RE N  A  LA+W+C
Subjt:  ALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWAC

A0A1R3IKP1 RNase H domain-containing protein2.9e-0436.36Show/hide
Query:  LIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWAC
        + HG+K   ++G+  V +ESDS   VLAI++G  ++     L++ I++LL N +     +I RE N  A  LA+W+C
Subjt:  LIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWAC

A0A6P9ETQ1 uncharacterized protein LOC1089834731.0e-0436.56Show/hide
Query:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQ--NTYFLGFSFIRESNSVAHQLAQWACFSGLSLVWTLDFP
        MAL   +++ LE+G+ +V  E DSK+L+ A+      DS +G ++ +I+ L    N + + F++ RESN VAH LA+ A      LVW  + P
Subjt:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQ--NTYFLGFSFIRESNSVAHQLAQWACFSGLSLVWTLDFP

A0A7J9IBE0 RNase H domain-containing protein4.5e-0533.7Show/hide
Query:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFP
        +A +H +    +MG ++V VE DS+ +++ +Q+G L  S  G  + EIR +  N  ++ F    RESN VAH +A+     G S  W  + P
Subjt:  MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFI-RESNSVAHQLAQWACFSGLSLVWTLDFP

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCTTTAATCCATGGATTAAAGATTGTTTTGGAGATGGGTTTGAAGGAGGTTTATGTTGAATCTGATTCTAAGCAGTTGGTGTTGGCAATCCAAAGGGGATGTTTGCT
CGACTCAAACTATGGTGCTCTATTGTCTGAAATTAGGGATTTACTGCAAAATACCTATTTTTTGGGTTTTTCTTTTATTCGAGAATCAAATTCTGTAGCTCATCAATTAG
CTCAATGGGCTTGTTTTTCTGGGCTTTCTTTGGTGTGGACCTTAGATTTTCCTCTATGGACCTCATATGTGAAGCGAATAAAAGAGAAGCGATGGAACAACGAAGCAAAG
CGACCATGTAAGGACCTCAAAAGCGAATTAAACGTCAAGGTCACGAAGCGGATAAAAAAAGCAGAACACAAAAGCCAAGAAGTCATTGAGAAGATTAAATCTCGTAAAAT
CTAG
mRNA sequenceShow/hide mRNA sequence
ATGGCTTTAATCCATGGATTAAAGATTGTTTTGGAGATGGGTTTGAAGGAGGTTTATGTTGAATCTGATTCTAAGCAGTTGGTGTTGGCAATCCAAAGGGGATGTTTGCT
CGACTCAAACTATGGTGCTCTATTGTCTGAAATTAGGGATTTACTGCAAAATACCTATTTTTTGGGTTTTTCTTTTATTCGAGAATCAAATTCTGTAGCTCATCAATTAG
CTCAATGGGCTTGTTTTTCTGGGCTTTCTTTGGTGTGGACCTTAGATTTTCCTCTATGGACCTCATATGTGAAGCGAATAAAAGAGAAGCGATGGAACAACGAAGCAAAG
CGACCATGTAAGGACCTCAAAAGCGAATTAAACGTCAAGGTCACGAAGCGGATAAAAAAAGCAGAACACAAAAGCCAAGAAGTCATTGAGAAGATTAAATCTCGTAAAAT
CTAG
Protein sequenceShow/hide protein sequence
MALIHGLKIVLEMGLKEVYVESDSKQLVLAIQRGCLLDSNYGALLSEIRDLLQNTYFLGFSFIRESNSVAHQLAQWACFSGLSLVWTLDFPLWTSYVKRIKEKRWNNEAK
RPCKDLKSELNVKVTKRIKKAEHKSQEVIEKIKSRKI