CuGenDBv2

Gene ID	Sed0010898
Organism	Sechium edule (Chayote v1)
Description	Hydroxyproline-rich glycoprotein family protein
Genome location	LG01:60474877..60475371
RNA-Seq Expression	Sed0010898
Synteny	Sed0010898
Gene Ontology terms	NA
InterPro domains	NA

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6572024.1 hypothetical protein SDJN03_28752, partial [Cucurbita argyrosperma subsp. sororia]

2.3e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

KAG7011696.1 hypothetical protein SDJN02_26602, partial [Cucurbita argyrosperma subsp. argyrosperma]

1.3e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

XP_022135938.1 probable serine/threonine-protein kinase samkC [Momordica charantia]

3.0e-38

47.7

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Query:  PRTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCV
        PR +     I+ PYPWST  RAVVH+L+YL+  QI+ I G+VKC++C   Y +EYDLVTK DEI  FIE+N             +P LP C  C +E C+
Subjt:  PRTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCV

Query:  EPVLPSSEEDDKDMED---------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
         PV+P  +EDD D ++                ++ L+YFCT+TNNHRT AKDRL++LTY  LC+QLQPS  LFH
Subjt:  EPVLPSSEEDDKDMED---------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

XP_022953023.1 mucin-16-like [Cucurbita moschata]

2.3e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

XP_022972400.1 uncharacterized protein KIAA0754-like [Cucurbita maxima]

3.0e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

TrEMBL top hits

e value

%identity

Alignment

A0A1S3CK70 uncharacterized protein LOC103501397

2.2e-31

49.08

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERNV------------SPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWST +RAVVHEL+YL+   I+ I GEV C KC   Y MEYDL+ K++EI +F E  +            +P LP C LC  E CV 
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERNV------------SPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDME-----------DEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQP
        PV  +S+ED K               ++RQL+YFCT TN HRTGAK+RLL+L+Y  L RQLQP
Subjt:  PVLPSSEEDDKDME-----------DEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQP

A0A6J1C462 uncharacterized protein LOC111007768

1.6e-34

45.29

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        R      PI  PYPWST  +AVVH+L YLR  QI+ I G+V+C++C   Y +EYDL+TK +EI  FIE+N             +P    C LC  E+CV 
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDM------------EDEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P +P  E D+K++              ++  L+YFC +TNNHRTGAK+RL++LTY  LC+QLQPS  LFH
Subjt:  PVLPSSEEDDKDM------------EDEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

A0A6J1C690 probable serine/threonine-protein kinase samkC

1.4e-38

47.7

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Query:  PRTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCV
        PR +     I+ PYPWST  RAVVH+L+YL+  QI+ I G+VKC++C   Y +EYDLVTK DEI  FIE+N             +P LP C  C +E C+
Subjt:  PRTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCV

Query:  EPVLPSSEEDDKDMED---------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
         PV+P  +EDD D ++                ++ L+YFCT+TNNHRT AKDRL++LTY  LC+QLQPS  LFH
Subjt:  EPVLPSSEEDDKDMED---------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

A0A6J1GM83 mucin-16-like

1.1e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

A0A6J1I8I0 uncharacterized protein KIAA0754-like

1.4e-38

48.26

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Query:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE
        RTRA+   I+ PYPWS  QRA +H LEYL+S  IV I G+V+C KC   Y +EY+L+ K DEI +FIER              +P LP C  C+ E+CVE
Subjt:  RTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVE

Query:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH
        P++P  E+D++                  +++QL+YFC HT NHRTGAKDRL+FLTY  LC+QLQPSN LF+
Subjt:  PVLPSSEEDDKDMED--------------EIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFH

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49330.1 hydroxyproline-rich glycoprotein family protein

4.0e-25

38.61

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Query:  IDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFI---ERNVS---------PTLPVCVLCKREHCVEPVLPSSEE
        I  P+PW+T +R  +  LEYL S QI  I GEV+C  C   Y + Y+L  +  E+VKF    +R +          P    C LC RE  V+PV+   + 
Subjt:  IDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFI---ERNVS---------PTLPVCVLCKREHCVEPVLPSSEE

Query:  DDKDM---------EDEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLF
            +            + QL+ FC H+ NHRTGAKDR+L+LTY  LC+ LQP + LF
Subjt:  DDKDM---------EDEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLF

AT2G16190.1 BEST Arabidopsis thaliana protein match is: hydroxyproline-rich glycoprotein family protein (TAIR:AT1G49330.1)

9.6e-19

33.33

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Query:  PYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVEPVLPSSEEDDK
        PYPW+T++   +     L S  I  I+G+V C  C  T  +EY+L  K  E+  +I+ N             +P L  C  CK E  ++PV+   +E+  
Subjt:  PYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERN------------VSPTLPVCVLCKREHCVEPVLPSSEEDDK

Query:  DME---------DEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNP
         +            + QLRYFC   + HRTG+KDR++++TY  LC+QL P  P
Subjt:  DME---------DEIRQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNP

Sequences

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CDS sequence

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ATGGGAGACGGCCCTAGAACGAGAGCGAACGCAATGCCGATCGATGCACCGTACCCATGGTCGACCAGGCAGCGAGCCGTGGTCCACGAGCTGGAGTACCTCCGGTCGAA
GCAGATCGTGGCTATTGCGGGAGAAGTGAAGTGCAACAAGTGCGGGGGGACGTACCTGATGGAATACGACTTGGTGACGAAGTTGGATGAGATAGTGAAGTTTATAGAGA
GGAACGTGTCGCCTACCTTACCCGTCTGCGTATTGTGTAAAAGAGAACACTGCGTCGAGCCGGTGCTTCCTTCGAGCGAGGAGGATGATAAAGACATGGAAGATGAGATC
AGGCAACTCAGATATTTCTGCACTCACACCAACAATCATCGAACTGGTGCTAAGGATCGCCTTCTTTTTCTCACTTATTTTGTTTTGTGTAGGCAACTTCAACCTTCCAA
CCCACTCTTCCATCCTTAG

mRNA sequence

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Protein sequence

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MGDGPRTRANAMPIDAPYPWSTRQRAVVHELEYLRSKQIVAIAGEVKCNKCGGTYLMEYDLVTKLDEIVKFIERNVSPTLPVCVLCKREHCVEPVLPSSEEDDKDMEDEI
RQLRYFCTHTNNHRTGAKDRLLFLTYFVLCRQLQPSNPLFHP

Sed0010898 (gene) of Chayote v1 genome