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Sed0010909 (gene) of Chayote v1 genome

Gene IDSed0010909
OrganismSechium edule (Chayote v1)
DescriptionTrafficking protein particle complex subunit
Genome locationLG11:4097549..4100923
RNA-Seq ExpressionSed0010909
SyntenySed0010909
Gene Ontology termsGO:0006888 - endoplasmic reticulum to Golgi vesicle-mediated transport (biological process)
GO:0005783 - endoplasmic reticulum (cellular component)
GO:0005794 - Golgi apparatus (cellular component)
GO:0030008 - TRAPP complex (cellular component)
InterPro domainsIPR007233 - Trafficking protein particle complex subunit
IPR011012 - Longin-like domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KGN61053.2 hypothetical protein Csa_021294 [Cucumis sativus]2.6e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

XP_004144741.1 trafficking protein particle complex subunit 4 [Cucumis sativus]2.6e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

XP_008453237.1 PREDICTED: trafficking protein particle complex subunit 4 [Cucumis melo]7.7e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

XP_022156391.1 trafficking protein particle complex subunit 4 [Momordica charantia]1.3e-7295.04Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP++GCSG+ELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

XP_031132245.1 trafficking protein particle complex subunit 4-like [Ipomoea triloba]1.4e-7193.62Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLR+ASLWHSMHAISQQLSP+ GCSG+ELL+ADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTD+VLKNPFYEMEMPIRCELFDINL QAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

TrEMBL top hitse value%identityAlignment
A0A0A0LJ20 Trafficking protein particle complex subunit1.3e-7397.16Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

A0A1S3BVQ7 Trafficking protein particle complex subunit3.7e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

A0A5A7TWY1 Trafficking protein particle complex subunit3.7e-7396.45Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP+ GCSGVELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQK+RVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

A0A6J1DUU4 Trafficking protein particle complex subunit6.3e-7395.04Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP++GCSG+ELLEADTFDLHCFQ+LTGTKFFVVCEPGTQHME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTDFVLKNPFYEMEMPIRCELFDINL+QAVQKDRVAL GR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

A0A6J1KK16 Trafficking protein particle complex subunit9.2e-7294.33Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSP++GCSG ELLEADTFDLHCFQ+LTGTKFFVVCEPGT HME LLKYIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTD+VLKNPFYEMEMPIRCELFDINL QAVQKDRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR

SwissProt top hitse value%identityAlignment
Q2TBL9 Trafficking protein particle complex subunit 46.8e-3258.49Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQTLTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LAQAVQ
        L  A++
Subjt:  LAQAVQ

Q54UU1 Trafficking protein particle complex subunit 45.1e-3553.6Show/hide
Query:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNG-CSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELY
        I S+YI+NK+G LI+  D+G+  ++  N  +R+ S +HS+HAI+  LSPV+G  SG+E++E + F L CFQT TG KF+V+ +P  Q +E+LL  +YELY
Subjt:  IYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNG-CSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELY

Query:  TDFVLKNPFYEMEMPIRCELFDINL
        TD+VLKNPFYE+EM IRC+LFD  L
Subjt:  TDFVLKNPFYEMEMPIRCELFDINL

Q69BT7 Trafficking protein particle complex subunit 46.8e-3258.49Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQTLTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LAQAVQ
        L  A++
Subjt:  LAQAVQ

Q9ES56 Trafficking protein particle complex subunit 46.8e-3258.49Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHCFQTLTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LAQAVQ
        L  A++
Subjt:  LAQAVQ

Q9Y296 Trafficking protein particle complex subunit 41.5e-3157.55Show/hide
Query:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN
        R+ +N+ L +AS++HS+ AI  QLSP  G SG+E+LE DTF LHC+QTLTG KF V+ +P    ++ LL+ IYE+Y+DF LKNPFY +EMPIRCELFD N
Subjt:  RMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDIN

Query:  LAQAVQ
        L  A++
Subjt:  LAQAVQ

Arabidopsis top hitse value%identityAlignment
AT1G51160.1 SNARE-like superfamily protein9.5e-1329.17Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPVN--------------GCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ PVN              GCS       +T+ L   +T +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPVN--------------GCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGT

Query:  QHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ
          + + LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ

AT1G51160.2 SNARE-like superfamily protein9.5e-1329.17Show/hide
Query:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPVN--------------GCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGT
        + +Y+ N++G  + YK++           D   +  L  S+ +++ ++ PVN              GCS       +T+ L   +T +G K  +V  P T
Subjt:  YSLYIINKSGGLIFYKDYGSAGRM--DTNDSLRVASLWHSMHAISQQLSPVN--------------GCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGT

Query:  QHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ
          + + LKYIY LY ++V+KNP Y    PI+ ELF+  L Q V+
Subjt:  QHMEDLLKYIYELYTDFVLKNPFYEMEMPIRCELFDINLAQAVQ

AT5G02280.1 SNARE-like superfamily protein1.1e-7290.78Show/hide
Query:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE
        MAAIYSLYIINKSGGLIFYKD G+ GRMDTNDSLRVASLWHSMHAISQQLSPVNGCSG+ELLEADTFDLHCFQ+L GTKFFVVCEPGT HME LL+YIYE
Subjt:  MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYE

Query:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR
        LYTD+VLKNPFYE+EMPIRCELFDINL QAVQ DRVALLGR
Subjt:  LYTDFVLKNPFYEMEMPIRCELFDINLAQAVQKDRVALLGR


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCAGCAATTTACAGCCTCTACATCATCAACAAATCCGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGACAGCTTGAGAGTTGC
AAGTTTATGGCATTCGATGCATGCCATTTCCCAGCAGCTTTCGCCTGTCAACGGTTGTTCTGGTGTTGAACTTCTTGAAGCTGACACATTCGACCTTCACTGCTTCCAGA
CGCTTACTGGAACAAAATTCTTTGTCGTGTGTGAGCCTGGGACACAGCACATGGAGGATCTTCTGAAATACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCA
TTCTATGAGATGGAGATGCCTATACGGTGTGAGCTCTTTGACATCAACCTAGCACAGGCAGTGCAGAAGGACCGTGTTGCGTTGCTTGGCCGATGA
mRNA sequenceShow/hide mRNA sequence
TTCGTCTTTATTTACATTTCCTGCCATTGGCGACTCCATCGAGTCCTCTTCAAGCTCCCGCTACTCACCCACTGGCTCAAGATCATTGAAACTGAAATTTTCGCCTTCGA
ATCTGCATTCTTCGTTGCACCGATTATCGTAATTCACAATCGAATCCGTAATCCTTCCGATTTTTCAACCCCCAAAGATCTAGAAAAGGATGGCAGCAATTTACAGCCTC
TACATCATCAACAAATCCGGTGGTTTGATCTTCTACAAGGATTATGGGTCTGCTGGACGAATGGACACAAACGACAGCTTGAGAGTTGCAAGTTTATGGCATTCGATGCA
TGCCATTTCCCAGCAGCTTTCGCCTGTCAACGGTTGTTCTGGTGTTGAACTTCTTGAAGCTGACACATTCGACCTTCACTGCTTCCAGACGCTTACTGGAACAAAATTCT
TTGTCGTGTGTGAGCCTGGGACACAGCACATGGAGGATCTTCTGAAATACATTTATGAGTTATACACAGATTTTGTCTTGAAGAATCCATTCTATGAGATGGAGATGCCT
ATACGGTGTGAGCTCTTTGACATCAACCTAGCACAGGCAGTGCAGAAGGACCGTGTTGCGTTGCTTGGCCGATGAGCTTCGAACATCCTTCATTTTGTCAGTATTGATGA
ATCCACAATTCAAGAAAGAAAGTCTCGTGTTATGATTGTGCAAAGTACTTGATAATTTACTGTCCTTAATGCTAAATGTACACCATGAATAGAGAATCGTGTGAGATTTG
GTGGAAATAGAATGTTCCTTTTCAGTGTTGCTCACCAGAAAGTCATGATTTATTTTATACCCTTTTTGTCTATGGCTAACAGATCTGAATCCAGTTAAATGACAGAGCAA
TTCATGTTTTGAGCTTTTGGGGCATGGGTTGCAGCAATGCACAACCAAATGAATATAAGCATCCAAATTATTTACTTTTTACTAAGACCCGTCTAGATAAATGAAAGCTT
CAGGTTCATGATGTTCATGATTTAATGCTCTATATGTTTACATATTAGCCTGGACAGCACAGTAAAATTGGCAGCCAATTCTTCAATTTCTCTGCATGGCACTGAACTGA
TTGTTATGATATTATTATTACTAACTCAATGC
Protein sequenceShow/hide protein sequence
MAAIYSLYIINKSGGLIFYKDYGSAGRMDTNDSLRVASLWHSMHAISQQLSPVNGCSGVELLEADTFDLHCFQTLTGTKFFVVCEPGTQHMEDLLKYIYELYTDFVLKNP
FYEMEMPIRCELFDINLAQAVQKDRVALLGR