; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; ; CuGenDBv2

Sed0010998 (gene) of Chayote v1 genome

Gene IDSed0010998
OrganismSechium edule (Chayote v1)
Description30S ribosomal protein S16
Genome locationLG12:28573917..28577218
RNA-Seq ExpressionSed0010998
SyntenySed0010998
Gene Ontology termsGO:0000724 - double-strand break repair via homologous recombination (biological process)
GO:0006334 - nucleosome assembly (biological process)
GO:0006412 - translation (biological process)
GO:0005634 - nucleus (cellular component)
GO:0009507 - chloroplast (cellular component)
GO:0015935 - small ribosomal subunit (cellular component)
GO:0003697 - single-stranded DNA binding (molecular function)
GO:0003735 - structural constituent of ribosome (molecular function)
GO:0005524 - ATP binding (molecular function)
GO:0008094 - DNA-dependent ATPase activity (molecular function)
InterPro domainsIPR000307 - Ribosomal protein S16
IPR023803 - Ribosomal protein S16 domain superfamily


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588049.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial, partial [Cucurbita argyrosperma subsp. sororia]1.2e-5889.43Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPM AM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSSIS
        RP+DP++GRF TPQ  TDDS+ S
Subjt:  RPIDPMTGRFVTPQMPTDDSSIS

XP_022147743.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial [Momordica charantia]1.4e-5990.91Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVR+RLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSS
        RP+DP++GRFVTP+ PTDDSS
Subjt:  RPIDPMTGRFVTPQMPTDDSS

XP_022933978.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita moschata]1.6e-5889.43Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSSIS
        RP+DP++GRF TPQ  TDDS+ S
Subjt:  RPIDPMTGRFVTPQMPTDDSSIS

XP_022968515.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like [Cucurbita maxima]4.2e-5990.24Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSSIS
        RP+DP++GRF TPQ  TDDS+ S
Subjt:  RPIDPMTGRFVTPQMPTDDSSIS

XP_038880699.1 30S ribosomal protein S16-2, chloroplastic/mitochondrial isoform X2 [Benincasa hispida]2.1e-5890.91Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSS
        R +DP++GRFVTP+ PTD SS
Subjt:  RPIDPMTGRFVTPQMPTDDSS

TrEMBL top hitse value%identityAlignment
A0A498KI51 Uncharacterized protein5.6e-5790.52Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRL+R GCKN+PFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMP
        RP+DPM+GRFVTP+ P
Subjt:  RPIDPMTGRFVTPQMP

A0A5D3CDW9 30S ribosomal protein S165.6e-5786.78Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLE+LGYYNPLPGQDGGKRMG+NFERVKYWLSVGAQPSDP+QR+LFRAG+LPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSS
        RP+DP++GRFVTP+    DSS
Subjt:  RPIDPMTGRFVTPQMPTDDSS

A0A6J1D251 30S ribosomal protein S16-2, chloroplastic/mitochondrial7.0e-6090.91Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVR+RLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPS+PVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSS
        RP+DP++GRFVTP+ PTDDSS
Subjt:  RPIDPMTGRFVTPQMPTDDSS

A0A6J1F6D0 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like7.8e-5989.43Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYY+PLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSSIS
        RP+DP++GRF TPQ  TDDS+ S
Subjt:  RPIDPMTGRFVTPQMPTDDSSIS

A0A6J1HXD7 30S ribosomal protein S16-2, chloroplastic/mitochondrial-like2.0e-5990.24Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKNKPFYRV+AADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQR+LFRAGVLPPPPMVAM RKGGPRDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPTDDSSIS
        RP+DP++GRF TPQ  TDDS+ S
Subjt:  RPIDPMTGRFVTPQMPTDDSSIS

SwissProt top hitse value%identityAlignment
A8LMC0 30S ribosomal protein S163.1e-2054.76Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLP
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D   R+ ++ ERV+YWL  GA+P+D V R+L  A VLP
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLP

O65686 30S ribosomal protein S16-1, chloroplastic1.6e-3255.36Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        M V+IRL+RLGCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  -RPIDPMTGRFV
         + + P+TG  +
Subjt:  -RPIDPMTGRFV

Q16AN8 30S ribosomal protein S164.0e-2054.88Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGV
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWL  GAQP+D V R+L  AG+
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGV

Q5LNF2 30S ribosomal protein S162.3e-2055.42Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVL
        M ++IRL+R G K +PFYR++AADSR PRDG+ +E LG YNPL  +D  +R+ ++ ERV+YWLS GAQ +D V R+L  AGV+
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVL

Q9LTS6 30S ribosomal protein S16-2, chloroplastic/mitochondrial2.5e-5482.91Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKN+PF+RV+AADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPT
        RP+DPMTGR+V  +  T
Subjt:  RPIDPMTGRFVTPQMPT

Arabidopsis top hitse value%identityAlignment
AT4G34620.1 small subunit ribosomal protein 161.1e-3355.36Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        M V+IRL+RLGCK++PFYRV+ AD +S RDGK +EVLG+Y+PL G++   R+ L F+R+KYWLSVGAQP+D V+ +LFRAG++PP PMV +  K G + T
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  -RPIDPMTGRFV
         + + P+TG  +
Subjt:  -RPIDPMTGRFV

AT5G56940.1 Ribosomal protein S16 family protein1.8e-5582.91Show/hide
Query:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT
        MVVRIRLSR GCKN+PF+RV+AADSRSPRDGKHLEVLGY+NPLPGQDGGKRMGL F+R+KYWLSVGAQPSDPVQR+LFR+G+LPPPPMVAM RKGG RDT
Subjt:  MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDT

Query:  RPIDPMTGRFVTPQMPT
        RP+DPMTGR+V  +  T
Subjt:  RPIDPMTGRFVTPQMPT

ATCG00050.1 ribosomal protein S164.7e-0833.33Show/hide
Query:  VVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGV
        +V++RL R G K +  YR++A D R  R+G+ L  +G+Y+P+  Q       LN   +  +L  GAQP+     +  +AG+
Subjt:  VVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGV


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGTGGTGAGAATTCGATTATCGAGGTTGGGTTGCAAGAACAAGCCATTTTACAGGGTAATTGCCGCCGATAGCCGATCTCCCAGGGACGGCAAGCATCTTGAAGTTCT
AGGTTATTATAATCCCCTGCCAGGTCAAGATGGAGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTACTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCTGTGC
AGCGTGTTCTTTTTAGAGCAGGGGTACTTCCACCACCCCCAATGGTTGCAATGGAACGTAAAGGCGGACCACGTGATACTCGTCCCATTGATCCTATGACCGGACGCTTC
GTGACTCCACAGATGCCAACTGATGATTCCAGTATCAGCTAA
mRNA sequenceShow/hide mRNA sequence
TCGGAAATGGAGGCGCGATTTCAGTTCTTCGTTTTGGTGTCGATTTCAGTTTGGTAAATTTGCAGGTTTTTGTTGCAGGGTTTTACGAGCTCAAAAATGGTGGTGAGAAT
TCGATTATCGAGGTTGGGTTGCAAGAACAAGCCATTTTACAGGGTAATTGCCGCCGATAGCCGATCTCCCAGGGACGGCAAGCATCTTGAAGTTCTAGGTTATTATAATC
CCCTGCCAGGTCAAGATGGAGGTAAACGAATGGGTCTTAATTTTGAAAGAGTGAAGTACTGGCTTTCAGTTGGTGCTCAGCCTTCAGACCCTGTGCAGCGTGTTCTTTTT
AGAGCAGGGGTACTTCCACCACCCCCAATGGTTGCAATGGAACGTAAAGGCGGACCACGTGATACTCGTCCCATTGATCCTATGACCGGACGCTTCGTGACTCCACAGAT
GCCAACTGATGATTCCAGTATCAGCTAAGATGGTAAGGCTGATTCATAATTTTTTTAGTGAAAACCTCTGGAATCATGTGAGATTTCCAACTCGCCCTGTTGTTCAGGCA
ATGTAGTTCAATAAATCGTTCAACTTAGTTTGATTGCAAGATGAGTGGGGTTTTTTTTTAATGAGAAATTAGGAAAAGGCTAAGTAGTACCACAGATTATCTTTAGATAT
TATAAACATGATAACATCTCTGTTCTATTCTTCTCTGTGTTATATCAATTAAAATGAACGATCAATCATTTTTGTTTCGTGTTGCTTGAGACCTTGTATCAATTGAAGTG
TTTCATCTCTGTTTTATTTTTCATTGA
Protein sequenceShow/hide protein sequence
MVVRIRLSRLGCKNKPFYRVIAADSRSPRDGKHLEVLGYYNPLPGQDGGKRMGLNFERVKYWLSVGAQPSDPVQRVLFRAGVLPPPPMVAMERKGGPRDTRPIDPMTGRF
VTPQMPTDDSSIS