CuGenDBv2

Gene ID	Sed0011025
Organism	Sechium edule (Chayote v1)
Description	Translocon-associated protein subunit beta
Genome location	LG08:29916421..29918060
RNA-Seq Expression	Sed0011025
Synteny	Sed0011025
Gene Ontology terms	GO:0005789 - endoplasmic reticulum membrane (cellular component) GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7017859.1 Translocon-associated protein subunit beta [Cucurbita argyrosperma subsp. argyrosperma]

6.5e-12

80.36

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

XP_022935419.1 translocon-associated protein subunit beta isoform X1 [Cucurbita moschata]

6.5e-12

80.36

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

XP_022983434.1 translocon-associated protein subunit beta isoform X1 [Cucurbita maxima]

2.2e-12

82.14

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

XP_022983435.1 translocon-associated protein subunit beta isoform X2 [Cucurbita maxima]

2.2e-12

82.14

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

XP_023528715.1 translocon-associated protein subunit beta [Cucurbita pepo subsp. pepo]

6.5e-12

80.36

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

TrEMBL top hits

e value

%identity

Alignment

A0A6J1EL83 Translocon-associated protein subunit beta

3.5e-11

76.79

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LL VSS IA+SDVPFIVAHKKASLTRLKSG ERVS SI+IYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

A0A6J1FAK9 Translocon-associated protein subunit beta

3.2e-12

80.36

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL  LFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

A0A6J1J5V1 Translocon-associated protein subunit beta

1.1e-12

82.14

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

A0A6J1J7C6 Translocon-associated protein subunit beta

1.1e-12

82.14

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LLFVSS IASSDVPFIVAHKKA+LTRLKSGVERVS SIEIYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

A0A6J1JKZ0 Translocon-associated protein subunit beta

3.5e-11

76.79

Show/hide

Query:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        LL LL VSS IA+SDVPFIVAHKKASLTRLKSG ERVS SI+IYNQGSS    + L
Subjt:  LLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G14030.1 translocon-associated protein beta (TRAPB) family protein

2.2e-10

56.14

Show/hide

Query:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Subjt:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

AT5G14030.2 translocon-associated protein beta (TRAPB) family protein

2.2e-10

56.14

Show/hide

Query:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Subjt:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

AT5G14030.3 translocon-associated protein beta (TRAPB) family protein

2.2e-10

56.14

Show/hide

Query:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Subjt:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

AT5G14030.4 translocon-associated protein beta (TRAPB) family protein

2.2e-10

56.14

Show/hide

Query:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL
        A+   + VS++ A+S+VPF+V HKKA+L RLKSG ERVS S +IYNQGSS    + L
Subjt:  ALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPL

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGTTCGTATTCGATAGAGGTAAAGTTATATTCTATTGTAAGAAGCTAGCTATTGAGGAAAAATTGCGGGAAGGAGAAGAGACACTAAGAAAGGGGAAGATGAAGAACTT
GGTGAAGACAAAAATTACCAAGCCGGTTAACGATGAGGTGATCAAAGGGATGTATTCTTTCAATGTTGATGAGCTTCTTGTTGGCATTCTTTCAATGCTGGAGAAGAGAC
AAAAGTTTTTCAGAGAGGATGAAATTGACATGGGGAGTGAGACAGACGCGTGGACAGAACAATTAATGGACTCGTGGCTCGAAAAGATGGACGCTCGCTGGCAGGCAGAG
GTCTCTATCATGTGGCTTAGAATGGTTGTCTTCTCTGATCTTGCACTTCTCACCCTACTCTTCGTCTCCTCTGCCATTGCATCCTCCGATGTCCCTTTCATTGTTGCGCA
CAAGAAGGCCTCTCTCACTCGCCTCAAATCCGGCGTCGAACGCGTCTCTAACTCCATCGAAATTTACAATCAAGGATCCTCGTATGTTCTTCCCATTCCTTTACTTCCCC
TGCGCTATCTGTGCTCTAGATCGAATTGTTCTTTACGCACGCCTAGTTTCATTCGTTATGCTTTGTTCTGGATCTGA

mRNA sequence

Show/hide mRNA sequence

Protein sequence

Show/hide protein sequence

MFVFDRGKVIFYCKKLAIEEKLREGEETLRKGKMKNLVKTKITKPVNDEVIKGMYSFNVDELLVGILSMLEKRQKFFREDEIDMGSETDAWTEQLMDSWLEKMDARWQAE
VSIMWLRMVVFSDLALLTLLFVSSAIASSDVPFIVAHKKASLTRLKSGVERVSNSIEIYNQGSSYVLPIPLLPLRYLCSRSNCSLRTPSFIRYALFWI

Sed0011025 (gene) of Chayote v1 genome