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Sed0011030 (gene) of Chayote v1 genome

Gene IDSed0011030
OrganismSechium edule (Chayote v1)
DescriptionCCHC-type domain-containing protein
Genome locationLG14:17337662..17340280
RNA-Seq ExpressionSed0011030
SyntenySed0011030
Gene Ontology termsGO:0003676 - nucleic acid binding (molecular function)
GO:0004523 - RNA-DNA hybrid ribonuclease activity (molecular function)
InterPro domainsIPR002156 - Ribonuclease H domain
IPR036397 - Ribonuclease H superfamily
IPR044730 - Ribonuclease H-like domain, plant type


Homology Show/hide homology
GenBank top hitse value%identityAlignment
TXG48328.1 hypothetical protein EZV62_027622 [Acer yangbiense]5.4e-0436.25Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        +GVG VIRDH G  + ++A   +  F P   EA+AL+ G++FAM   ++   +E+DAK VV+ ++ G    +  GV++ +
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

TXG57364.1 hypothetical protein EZV62_018677 [Acer yangbiense]6.4e-0531.54Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE------RRLIVLAVPSTRGN
        +G G +IRD  G  + ++         P A EA+A+  G+ FA++   L + VE+DAKGVVE + KG   D+ YGV++ +        L+ ++V  +  N
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE------RRLIVLAVPSTRGN

Query:  VGGGALSKSLIPENKIVVSNSKNLAAGITC
          G             V     NLAA  TC
Subjt:  VGGGALSKSLIPENKIVVSNSKNLAAGITC

XP_023913700.1 uncharacterized protein LOC112025280 [Quercus suber]2.4e-0436.71Show/hide
Query:  GVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        G+G V+RDH G  + A A        P   EALA    L FA KL I ++SVE D+K +++A+  G   +  YG ++ +
Subjt:  GVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

XP_042958227.1 uncharacterized protein LOC122293845 [Carya illinoinensis]4.9e-0540Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        +GVGA++RDH GR +         + DP +GEA AL+ G+ F   + +  + VE DA  V+  +  GS LD SYG L+ E
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

XP_042973114.1 uncharacterized protein LOC122304919 [Carya illinoinensis]2.4e-0432.48Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE---RRLIVLAVPSTRGNVGG
        +GVGA++RDH GR +         + +P +GEA AL+  + F   + +  + VE DA  V+  +  GS LD SYG L+ E   R+L   A  S       
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE---RRLIVLAVPSTRGNVGG

Query:  GALSKSLIPENKIVVSN
        G  +   +  N + +SN
Subjt:  GALSKSLIPENKIVVSN

TrEMBL top hitse value%identityAlignment
A0A2I4HIC0 uncharacterized protein LOC1090182024.5e-0436.25Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        +GVG VIRDH G  VAA      +     A E+ AL   ++   +L + ++  E DAK V+E+VK+    DS +G ++E+
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

A0A444YTS5 RNase H domain-containing protein1.0e-0335.44Show/hide
Query:  GVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        GVG V+RD+ G+ +AAA+    +  +P   EA A   G++ AM+     I +++D   +V A+KKG  LDS +G  + +
Subjt:  GVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

A0A5C7GUE0 CCHC-type domain-containing protein2.6e-0436.25Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE
        +GVG VIRDH G  + ++A   +  F P   EA+AL+ G++FAM   ++   +E+DAK VV+ ++ G    +  GV++ +
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE

A0A5C7HA98 CCHC-type domain-containing protein3.4e-0435.23Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEERRLIVLAV
        +GVGA+IRD  G+ + AA       +DP   EA+A++ GL+ A+   +L   +E+DA+ VV  +  GS + +  GV+L + R++   V
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEERRLIVLAV

A0A5C7HKD5 Uncharacterized protein3.1e-0531.54Show/hide
Query:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE------RRLIVLAVPSTRGN
        +G G +IRD  G  + ++         P A EA+A+  G+ FA++   L + VE+DAKGVVE + KG   D+ YGV++ +        L+ ++V  +  N
Subjt:  MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEE------RRLIVLAVPSTRGN

Query:  VGGGALSKSLIPENKIVVSNSKNLAAGITC
          G             V     NLAA  TC
Subjt:  VGGGALSKSLIPENKIVVSNSKNLAAGITC

SwissProt top hitse value%identityAlignment
No hits found
Arabidopsis top hitse value%identityAlignment
No hits found

Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGGAGTTGGAGCGGTAATCCGAGACCACTGTGGTCGATGTGTAGCTGCCGCAGCTGGATTTTATGCTTTTCATTTTGATCCTATTGCGGGTGAGGCTTTAGCGTTAAT
TAATGGTCTCCAATTTGCAATGAAGTTGGATATTTTAGAGATTTCTGTTGAAGCTGATGCAAAAGGCGTTGTTGAAGCAGTGAAGAAAGGAAGTTGGCTGGACTCAAGCT
ACGGTGTATTGCTAGAAGAAAGAAGACTGATTGTTTTGGCCGTTCCATCCACTCGAGGAAATGTAGGAGGTGGTGCCCTGAGCAAGAGTTTAATACCTGAAAATAAAATT
GTTGTTTCAAATAGTAAGAACCTAGCAGCAGGAATAACTTGCTATGAATCCATTACCCAACACCAATAA
mRNA sequenceShow/hide mRNA sequence
ATGGGAGTTGGAGCGGTAATCCGAGACCACTGTGGTCGATGTGTAGCTGCCGCAGCTGGATTTTATGCTTTTCATTTTGATCCTATTGCGGGTGAGGCTTTAGCGTTAAT
TAATGGTCTCCAATTTGCAATGAAGTTGGATATTTTAGAGATTTCTGTTGAAGCTGATGCAAAAGGCGTTGTTGAAGCAGTGAAGAAAGGAAGTTGGCTGGACTCAAGCT
ACGGTGTATTGCTAGAAGAAAGAAGACTGATTGTTTTGGCCGTTCCATCCACTCGAGGAAATGTAGGAGGTGGTGCCCTGAGCAAGAGTTTAATACCTGAAAATAAAATT
GTTGTTTCAAATAGTAAGAACCTAGCAGCAGGAATAACTTGCTATGAATCCATTACCCAACACCAATAA
Protein sequenceShow/hide protein sequence
MGVGAVIRDHCGRCVAAAAGFYAFHFDPIAGEALALINGLQFAMKLDILEISVEADAKGVVEAVKKGSWLDSSYGVLLEERRLIVLAVPSTRGNVGGGALSKSLIPENKI
VVSNSKNLAAGITCYESITQHQ