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Sed0011034 (gene) of Chayote v1 genome

Gene IDSed0011034
OrganismSechium edule (Chayote v1)
Descriptioncytochrome b6f complex subunit (petM), putative
Genome locationLG10:37145532..37146427
RNA-Seq ExpressionSed0011034
SyntenySed0011034
Gene Ontology termsGO:0009512 - cytochrome b6f complex (cellular component)
GO:0016021 - integral component of membrane (cellular component)
InterPro domainsIPR012595 - PetM of cytochrome b6/f complex subunit 7


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6588635.1 Cytochrome b6-f complex subunit 7, partial [Cucurbita argyrosperma subsp. sororia]7.8e-4379.84Show/hide
Query:  ASMATASATLSPPMSTVA---AVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAK--SGGGALASTCNAAGEIFKI
        ASMATASATLSP MST A   A SRRQR T VH+ISGL+SFGGLKAHNN+  LG+PVC D+SFANIV SLK PLKGK K  SGGGAL STCNAAGEIF+I
Subjt:  ASMATASATLSPPMSTVA---AVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAK--SGGGALASTCNAAGEIFKI

Query:  AFIINGLVLVGVAVGFVLLRIEAFVEEAE
        A IINGLVLVGVAVGFVLLR+EAFVEE+E
Subjt:  AFIINGLVLVGVAVGFVLLRIEAFVEEAE

XP_004136999.1 uncharacterized protein LOC101210164 [Cucumis sativus]2.9e-4564.86Show/hide
Query:  MNHPNSSHLIHFPSSSFSLQTK-SPFSHQILQSHPNFPQIPLSFSLFLVFQ-------ASMATASATLSPPMSTVAAV---SRRQRPTAVHHISGLHSFG
        MNHPNSS+LIH    SFS+QT  SP            P +P S S  + F          MATASATLS  MS+ A +   SRRQR T  H ISGL+SF 
Subjt:  MNHPNSSHLIHFPSSSFSLQTK-SPFSHQILQSHPNFPQIPLSFSLFLVFQ-------ASMATASATLSPPMSTVAAV---SRRQRPTAVHHISGLHSFG

Query:  GLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAFVEEAE
        GLKAHNNV  LGLPVC DQSFA IVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IINGLVL+GVAVGFVLLRIEA VEEAE
Subjt:  GLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAFVEEAE

XP_022972366.1 uncharacterized protein LOC111470941 [Cucurbita maxima]6.0e-4381.45Show/hide
Query:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN
        ATASATLSP +ST   +AA SRRQR T VH+I+GL+SFGGLKAHNN+  LGLPVC DQSFANIVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IIN
Subjt:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN

Query:  GLVLVGVAVGFVLLRIEAFVEEAE
        GLVLVGVAVGFVLLRIEA VEEAE
Subjt:  GLVLVGVAVGFVLLRIEAFVEEAE

XP_023554105.1 uncharacterized protein LOC111811473 [Cucurbita pepo subsp. pepo]2.7e-4381.45Show/hide
Query:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN
        ATASATLSPP+ST   +AA SRRQR   VH+I+GL+SFGGLKAHNN+  LGLPVC DQSFANIVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IIN
Subjt:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN

Query:  GLVLVGVAVGFVLLRIEAFVEEAE
        GLVLVGVAVGFVLLRIEA VEEAE
Subjt:  GLVLVGVAVGFVLLRIEAFVEEAE

XP_038887487.1 uncharacterized protein LOC120077620 [Benincasa hispida]2.1e-4380.8Show/hide
Query:  MATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII
        MATASATLSP M T   +AA SRRQR T VH+I+GL+SFGGLKAHNNV  LGLPVC DQSFANI+SSLKYP KGK K+GGGAL+STCNAAGEIF+IA II
Subjt:  MATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII

Query:  NGLVLVGVAVGFVLLRIEAFVEEAE
        NGLVL+GVAVGFVLLRIEA VEEAE
Subjt:  NGLVLVGVAVGFVLLRIEAFVEEAE

TrEMBL top hitse value%identityAlignment
A0A0A0K4W4 Uncharacterized protein6.9e-4562.44Show/hide
Query:  MNHPNSSHLIHFPSSSFSLQTK-SP------FSHQI---------------LQSHPNFP-----QIPLSFSL-FLVFQASMATASATLSPPMSTVAAV--
        MNHPNSS+LIH    SFS+QT  SP       SH I               L  +P FP      I  SFSL  L     MATASATLS  MS+ A +  
Subjt:  MNHPNSSHLIHFPSSSFSLQTK-SP------FSHQI---------------LQSHPNFP-----QIPLSFSL-FLVFQASMATASATLSPPMSTVAAV--

Query:  -SRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAF
         SRRQR T  H ISGL+SF GLKAHNNV  LGLPVC DQSFA IVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IINGLVL+GVAVGFVLLRIEA 
Subjt:  -SRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAF

Query:  VEEAE
        VEEAE
Subjt:  VEEAE

A0A1S3C0U4 uncharacterized protein LOC1034952014.9e-4380.8Show/hide
Query:  MATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII
        MATASATLS  MST   +AA SRRQR T VH+I+GL+SFGGLKAHNNV  LGLPVC DQSFA IVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA II
Subjt:  MATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII

Query:  NGLVLVGVAVGFVLLRIEAFVEEAE
        NGLVL+GVAVGFVLLRIEA VEEAE
Subjt:  NGLVLVGVAVGFVLLRIEAFVEEAE

A0A6J1EUM6 uncharacterized protein LOC1114377578.4e-4380.31Show/hide
Query:  MATASATLSPPMSTVA---AVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAK--SGGGALASTCNAAGEIFKIAF
        MATASATLSP MST A   A SRRQR T VH+ISGL+SFGGLKAHNN+  LG+PVC DQSFANIV SLK PLKGK K  SGGGAL STCNAAGEIF+IA 
Subjt:  MATASATLSPPMSTVA---AVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAK--SGGGALASTCNAAGEIFKIAF

Query:  IINGLVLVGVAVGFVLLRIEAFVEEAE
        IINGLVLVGVAVGFVLLR+EAFVEE+E
Subjt:  IINGLVLVGVAVGFVLLRIEAFVEEAE

A0A6J1GND2 uncharacterized protein LOC1114555031.4e-4279.84Show/hide
Query:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN
        AT SATLSPP+ST   +AA SRRQR T VH+I+GL+SF GLKAHNN+  LGLPVC DQSFA+IVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IIN
Subjt:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN

Query:  GLVLVGVAVGFVLLRIEAFVEEAE
        GLVLVGVAVGFVLLRIEA VEEAE
Subjt:  GLVLVGVAVGFVLLRIEAFVEEAE

A0A6J1I5T0 uncharacterized protein LOC1114709412.9e-4381.45Show/hide
Query:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN
        ATASATLSP +ST   +AA SRRQR T VH+I+GL+SFGGLKAHNN+  LGLPVC DQSFANIVSSLKYP KGK K+GGGAL+STCNAAGEIF+IA IIN
Subjt:  ATASATLSPPMST---VAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIIN

Query:  GLVLVGVAVGFVLLRIEAFVEEAE
        GLVLVGVAVGFVLLRIEA VEEAE
Subjt:  GLVLVGVAVGFVLLRIEAFVEEAE

SwissProt top hitse value%identityAlignment
P80883 Cytochrome b6-f complex subunit 7 (Fragment)2.7e-0677.78Show/hide
Query:  NAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAFVEE
        NAA EIF+IA ++NGL LVGVA+GFVLLRIEA VEE
Subjt:  NAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAFVEE

Arabidopsis top hitse value%identityAlignment
AT2G26500.1 cytochrome b6f complex subunit (petM), putative5.1e-2453.6Show/hide
Query:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII
        A A A +S   S + + S   +++    V +I+GL+S+GGLKA NN V  +G P+C +Q FAN+V SLK       +  GGAL++TCNA GEIFKIA I+
Subjt:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII

Query:  NGLVLVGVAVGFVLLRIEAFVEEAE
        N L LVGVAVGFVLLRIE  VEEAE
Subjt:  NGLVLVGVAVGFVLLRIEAFVEEAE

AT2G26500.2 cytochrome b6f complex subunit (petM), putative5.1e-2453.6Show/hide
Query:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII
        A A A +S   S + + S   +++    V +I+GL+S+GGLKA NN V  +G P+C +Q FAN+V SLK       +  GGAL++TCNA GEIFKIA I+
Subjt:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII

Query:  NGLVLVGVAVGFVLLRIEAFVEEAE
        N L LVGVAVGFVLLRIE  VEEAE
Subjt:  NGLVLVGVAVGFVLLRIEAFVEEAE

AT2G26500.3 cytochrome b6f complex subunit (petM), putative3.0e-0836Show/hide
Query:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII
        A A A +S   S + + S   +++    V +I+GL+S+GGLKA NN V  +G P+C +Q FAN+V SLK                               
Subjt:  ATASATLSPPMSTVAAVS---RRQRPTAVHHISGLHSFGGLKAHNN-VAKLGLPVCVDQSFANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFII

Query:  NGLVLVGVAVGFVLLRIEAFVEEAE
              G  VGFVLLRIE  VEEAE
Subjt:  NGLVLVGVAVGFVLLRIEAFVEEAE


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGAACCACCCAAACTCCTCTCACCTTATCCATTTCCCCTCTTCATCTTTCTCCTTACAAACCAAATCCCCATTTTCCCATCAAATTCTTCAATCTCACCCAAATTTCCC
CCAAATCCCTCTTTCATTTTCACTATTTCTTGTCTTTCAGGCTTCCATGGCGACCGCCTCCGCAACCCTCTCGCCGCCCATGTCCACCGTCGCCGCCGTCTCGAGGCGGC
AGAGGCCAACCGCCGTCCACCACATTTCCGGCCTCCACTCCTTTGGTGGGTTGAAAGCTCACAACAATGTCGCCAAATTGGGCCTTCCCGTTTGCGTTGATCAGTCATTT
GCCAACATTGTGAGTTCCTTGAAATACCCATTAAAGGGAAAGGCCAAATCCGGCGGCGGTGCTCTGGCTTCCACTTGTAACGCCGCCGGTGAGATTTTCAAGATTGCTTT
CATTATCAATGGCCTAGTTCTTGTCGGAGTTGCTGTCGGGTTTGTTCTTCTTCGGATTGAGGCGTTTGTGGAGGAGGCTGAGTGA
mRNA sequenceShow/hide mRNA sequence
TCCCAATAGTAGAGATATCACCATTTTATTTTTTCCCCTTAGGCTAACATCCAAAGATTTCACAAAATTCTAATCTCTTTATGAACCACCCAAACTCCTCTCACCTTATC
CATTTCCCCTCTTCATCTTTCTCCTTACAAACCAAATCCCCATTTTCCCATCAAATTCTTCAATCTCACCCAAATTTCCCCCAAATCCCTCTTTCATTTTCACTATTTCT
TGTCTTTCAGGCTTCCATGGCGACCGCCTCCGCAACCCTCTCGCCGCCCATGTCCACCGTCGCCGCCGTCTCGAGGCGGCAGAGGCCAACCGCCGTCCACCACATTTCCG
GCCTCCACTCCTTTGGTGGGTTGAAAGCTCACAACAATGTCGCCAAATTGGGCCTTCCCGTTTGCGTTGATCAGTCATTTGCCAACATTGTGAGTTCCTTGAAATACCCA
TTAAAGGGAAAGGCCAAATCCGGCGGCGGTGCTCTGGCTTCCACTTGTAACGCCGCCGGTGAGATTTTCAAGATTGCTTTCATTATCAATGGCCTAGTTCTTGTCGGAGT
TGCTGTCGGGTTTGTTCTTCTTCGGATTGAGGCGTTTGTGGAGGAGGCTGAGTGATTCTTGATCATCCTATTGTGTTACAATTTGTAAGTCTAATCTGTTTGTCTTTTTT
TCCATTACTTATTTGTAGAACTTGATTGGTTCTGTCTAAGTCAAAACAATTGACTATGTATTCATTTTGCATGTTTGTCACATCTCTTATCTCTTCAAAATAATGGCAGT
GTAGTATATATGTTCATTTGCTGCATATTCTTGTATATTTTTGTGCTGCTTGGATCTTGAGAAGAATAAGAAATGAACTTTGCAGGGCAGTTTCAATCTTGACTCTTGAG
ACTGGTTTTCGATTAA
Protein sequenceShow/hide protein sequence
MNHPNSSHLIHFPSSSFSLQTKSPFSHQILQSHPNFPQIPLSFSLFLVFQASMATASATLSPPMSTVAAVSRRQRPTAVHHISGLHSFGGLKAHNNVAKLGLPVCVDQSF
ANIVSSLKYPLKGKAKSGGGALASTCNAAGEIFKIAFIINGLVLVGVAVGFVLLRIEAFVEEAE