CuGenDBv2

Gene ID	Sed0011064
Organism	Sechium edule (Chayote v1)
Description	60S acidic ribosomal protein P0
Genome location	LG13:19852300..19852713
RNA-Seq Expression	Sed0011064
Synteny	Sed0011064
Gene Ontology terms	GO:0000027 - ribosomal large subunit assembly (biological process) GO:0002181 - cytoplasmic translation (biological process) GO:0022625 - cytosolic large ribosomal subunit (cellular component) GO:0003735 - structural constituent of ribosome (molecular function) GO:0070180 - large ribosomal subunit rRNA binding (molecular function)
InterPro domains	IPR040637 - 60S ribosomal protein L10P, insertion domain IPR043164 - 50S ribosomal protein L10, insertion domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAA0031813.1 60S acidic ribosomal protein P0-like [Cucumis melo var. makuwa]

4.5e-40

82.46

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

XP_008457380.1 PREDICTED: 60S acidic ribosomal protein P0-like [Cucumis melo]

4.5e-40

82.46

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

XP_022964942.1 60S acidic ribosomal protein P0-like [Cucurbita moschata]

2.4e-41

85.09

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FDPEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVAVA
Subjt:  PVNAYKNALAVAVA

XP_022970458.1 60S acidic ribosomal protein P0-like [Cucurbita maxima]

2.4e-41

85.09

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FDPEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVAVA
Subjt:  PVNAYKNALAVAVA

XP_038895318.1 60S acidic ribosomal protein P0-like [Benincasa hispida]

3.1e-41

84.21

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIV+SVYDNG  FDPEVLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALAVAVA
Subjt:  PVNAYKNALAVAVA

TrEMBL top hits

e value

%identity

Alignment

A0A1S3C6N6 60S acidic ribosomal protein P0

2.2e-40

82.46

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

A0A5A7SNJ3 60S acidic ribosomal protein P0

2.2e-40

82.46

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

A0A5D3BFC6 60S acidic ribosomal protein P0

2.2e-40

82.46

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  F P VLDLTE+DLLEKF +GVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

A0A6J1HJ11 60S acidic ribosomal protein P0

1.2e-41

85.09

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FDPEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVAVA
Subjt:  PVNAYKNALAVAVA

A0A6J1I3W8 60S acidic ribosomal protein P0

1.2e-41

85.09

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGLIVVSVYDNG  FDPEVLDLTE+DLLEKF SGVS+VASLSL VSFPTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVAVA
Subjt:  PVNAYKNALAVAVA

SwissProt top hits

e value

%identity

Alignment

O04204 60S acidic ribosomal protein P0-1

6.1e-40

74.56

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F+PEVL+LTEDDL+EKF +GVS++ +LSL +S+PT+A AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVA+A
Subjt:  PVNAYKNALAVAVA

P41095 60S acidic ribosomal protein P0

6.1e-40

74.34

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSE+ALL KLGIRPFSYGL++ +VYD+G  F PEVLDLTEDDL+EKF SGVS+VAS+SL +S+PT+A AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAV
         +N YKN LAVAV
Subjt:  PVNAYKNALAVAV

P50346 60S acidic ribosomal protein P0

7.2e-41

77.88

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELI+KGD VGSSEAALL KLGIRPFSYGL+V+SVYDNG  F PEVLDLTEDDL+ KF +GVS+V SLSL +S+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAV
         VNAYKN LAVAV
Subjt:  PVNAYKNALAVAV

P57691 60S acidic ribosomal protein P0-3

5.6e-41

77.19

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

Q42112 60S acidic ribosomal protein P0-2

5.6e-41

77.19

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Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

Arabidopsis top hits

e value

%identity

Alignment

AT2G40010.1 Ribosomal protein L10 family protein

4.4e-41

74.56

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIKKGD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F+PEVL+LTEDDL+EKF +GVS++ +LSL +S+PT+A AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKN LAVA+A
Subjt:  PVNAYKNALAVAVA

AT3G09200.1 Ribosomal protein L10 family protein

3.9e-42

77.19

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

AT3G09200.2 Ribosomal protein L10 family protein

3.9e-42

77.19

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

AT3G11250.1 Ribosomal protein L10 family protein

3.9e-42

77.19

Show/hide

Query:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM
        +NIPT INKGTVE IT VELIK+GD VGSSEAALL KLGIRPFSYGL+V SVYDNG  F PEVLDLTED L+EKF SG+S+V SL+L VS+PTLA AP M
Subjt:  VNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRM

Query:  PVNAYKNALAVAVA
         +NAYKNALA+AVA
Subjt:  PVNAYKNALAVAVA

Sequences

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CDS sequence

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ATGATCATAATTTCAAGTGCTGTGAACATCCCCACAAACATTAACAAAGGCACAGTTGAAACCATCACTTCTGTAGAGCTAATCAAGAAAGGAGACAACGTCGGCTCGTC
CGAGGCCGCGCTACTCTGTAAGCTTGGGATAAGGCCCTTCTCTTACGGTCTCATTGTCGTCTCTGTCTACGACAATGGCTTTGGTTTCGACCCCGAGGTGCTTGATCTTA
CAGAAGATGATCTTCTTGAAAAATTCCATTCTGGGGTTTCAATCGTTGCTTCTCTCTCGCTCGTCGTGTCTTTCCCGACGCTTGCCGTGGCTCCCCGCATGCCCGTCAAC
GCGTACAAGAATGCTCTTGCTGTTGCTGTTGCTGTTGCCGTTGGTTGCTACTGA

mRNA sequence

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Protein sequence

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MIIISSAVNIPTNINKGTVETITSVELIKKGDNVGSSEAALLCKLGIRPFSYGLIVVSVYDNGFGFDPEVLDLTEDDLLEKFHSGVSIVASLSLVVSFPTLAVAPRMPVN
AYKNALAVAVAVAVGCY

Sed0011064 (gene) of Chayote v1 genome