CuGenDBv2

Gene ID	Sed0011065
Organism	Sechium edule (Chayote v1)
Description	BHLH domain-containing protein
Genome location	LG12:5342868..5343536
RNA-Seq Expression	Sed0011065
Synteny	Sed0011065
Gene Ontology terms	GO:0006355 - regulation of transcription, DNA-templated (biological process) GO:0005634 - nucleus (cellular component) GO:0016021 - integral component of membrane (cellular component) GO:0003700 - DNA-binding transcription factor activity (molecular function) GO:0043565 - sequence-specific DNA binding (molecular function) GO:0046983 - protein dimerization activity (molecular function)
InterPro domains	IPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain IPR036638 - Helix-loop-helix DNA-binding domain superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG6582238.1 Transcription factor basic helix-loop-helix 95, partial [Cucurbita argyrosperma subsp. sororia]

2.2e-67

75.76

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK
        KP+ESV       SDS  G V+VSVS NIVLFGII ASVRRGMVTQILMAFERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE+IRNDIL+L+K
Subjt:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK

XP_022955986.1 uncharacterized protein LOC111457820 [Cucurbita moschata]

2.2e-67

75.76

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK
        KP+ESV       SDS  G V+VSVS NIVLFGII ASVRRGMVTQILMAFERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE+IRNDIL+L+K
Subjt:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK

XP_022979931.1 uncharacterized protein LOC111479473 [Cucurbita maxima]

5.5e-66

73.4

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS------SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILN
        KP+ESV       SDS       G V+VSVS NIVLFGII ASVRRGMVT+ILMAFERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE+IRNDIL+
Subjt:  KPVESV------KSDS------SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILN

Query:  LEK
        L+K
Subjt:  LEK

XP_023528352.1 uncharacterized protein LOC111791298 [Cucurbita pepo subsp. pepo]

8.5e-67

74.13

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS----SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE
        KP+ESV       SDS     G V+VSVS NIVLFGII ASVRRGMVTQILMAFERHQAEVLAANVAV+HGNL+L+VTAS+H YVENTIE+IRNDIL+L+
Subjt:  KPVESV------KSDS----SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE

Query:  K
        K
Subjt:  K

XP_038885840.1 transcription factor bHLH95-like [Benincasa hispida]

2.3e-64

72.64

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+PLFP +LP H  +A E  AS SRKR +ALE + G Q+K R KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+FLQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDSS----GDVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE
        K  ESV       SDSS    G V+VSVSGNIVLFG IIASV+RGMVTQILM FERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE I+NDIL+L+
Subjt:  KPVESV------KSDSS----GDVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE

Query:  K
        K
Subjt:  K

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L5R7 BHLH domain-containing protein

8.9e-62

69.31

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEAC++SVIPLFP +LP HH +A E  AS SRKR +ALE + G Q+K + KRK+M+ESFDVL SLVPN+SPKATRE IV+  IQFI+FLQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDSSG-----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNL
        K  ESV       SDSSG      V+VS+SGNIVLFG IIASV+RG+VTQIL+ FERH+AEVLAANV V+HGNL+L+VTASVH YVENTIE+IRNDIL L
Subjt:  KPVESV------KSDSSG-----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNL

Query:  EK
        +K
Subjt:  EK

A0A1S4DSM0 transcription factor bHLH95-like

8.9e-62

69.15

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEAC++SV+PLFP +LP HH +A E  AS SRKR +ALE + G Q+K + KRK+M+ESFDVL SLVPN+SPKATRE IV+  IQFI+FLQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDSSG----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE
        K  ESV       SDSSG     V+VS+SGNIVLFG IIASV+RGMVTQIL+ FERH+ EVLAANV V+HGNL+L+VTASVH YVENTIE+IRNDIL+L+
Subjt:  KPVESV------KSDSSG----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE

Query:  K
        K
Subjt:  K

A0A5A7U767 Transcription factor bHLH95-like

8.9e-62

69.15

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEAC++SV+PLFP +LP HH +A E  AS SRKR +ALE + G Q+K + KRK+M+ESFDVL SLVPN+SPKATRE IV+  IQFI+FLQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDSSG----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE
        K  ESV       SDSSG     V+VS+SGNIVLFG IIASV+RGMVTQIL+ FERH+ EVLAANV V+HGNL+L+VTASVH YVENTIE+IRNDIL+L+
Subjt:  KPVESV------KSDSSG----DVVVSVSGNIVLFG-IIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLE

Query:  K
        K
Subjt:  K

A0A6J1GWN9 uncharacterized protein LOC111457820

1.1e-67

75.76

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK
        KP+ESV       SDS  G V+VSVS NIVLFGII ASVRRGMVTQILMAFERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE+IRNDIL+L+K
Subjt:  KPVESV------KSDS-SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK

A0A6J1IS55 uncharacterized protein LOC111479473

2.7e-66

73.4

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Query:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        MEACT+SV+ L P +LP H  +AAEN ASTSRKR +ALE + G QRKGR KRK+M+ESFDVL SLVPN+SPKATRE IV+ETIQFI+ LQKQL+RLEMEK
Subjt:  MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Query:  KPVESV------KSDS------SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILN
        KP+ESV       SDS       G V+VSVS NIVLFGII ASVRRGMVT+ILMAFERHQAEVLAANVAV+HGNL+L+VTASVH YVENTIE+IRNDIL+
Subjt:  KPVESV------KSDS------SGDVVVSVSGNIVLFGII-ASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILN

Query:  LEK
        L+K
Subjt:  LEK

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT1G49770.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

9.8e-05

33.67

Show/hide

Query:  LPAH--HPQAAENNASTSRKRHKALEPSDGAQRK-----------GRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK
        LP+H  HP + E   +T +K  K  + +D    +            R +RKKM + F  LH+L+P + PKA +  IV E +  I+ L++ L +LEM+K
Subjt:  LPAH--HPQAAENNASTSRKRHKALEPSDGAQRK-----------GRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEK

Sequences

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CDS sequence

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ATGGAAGCCTGCACCAACTCCGTGATTCCACTTTTTCCGCAGTTATTGCCGGCGCATCACCCTCAAGCCGCTGAGAACAACGCTTCCACCTCAAGAAAGCGTCACAAAGC
TTTGGAACCCAGCGATGGCGCACAGAGGAAGGGAAGAGCGAAGAGGAAGAAGATGACCGAGAGTTTCGACGTTCTTCACTCTCTCGTGCCGAATATCTCTCCCAAGGCTA
CGAGGGAGAAAATCGTTACGGAGACGATCCAGTTCATCCAGTTTCTGCAGAAGCAGTTGGTGAGGCTGGAAATGGAGAAGAAGCCAGTGGAATCGGTGAAATCGGATTCA
TCCGGCGACGTCGTCGTCTCGGTCTCCGGCAACATCGTGTTGTTTGGGATTATTGCTTCTGTTCGACGAGGTATGGTGACACAGATTTTAATGGCGTTTGAGAGACACCA
GGCTGAAGTTCTTGCAGCTAATGTTGCTGTTAACCATGGAAATTTAAGTTTATCAGTTACAGCTTCTGTACACGATTACGTTGAGAATACCATAGAGAAGATTAGAAACG
ATATCCTGAACTTAGAGAAGTAA

mRNA sequence

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Protein sequence

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MEACTNSVIPLFPQLLPAHHPQAAENNASTSRKRHKALEPSDGAQRKGRAKRKKMTESFDVLHSLVPNISPKATREKIVTETIQFIQFLQKQLVRLEMEKKPVESVKSDS
SGDVVVSVSGNIVLFGIIASVRRGMVTQILMAFERHQAEVLAANVAVNHGNLSLSVTASVHDYVENTIEKIRNDILNLEK

Sed0011065 (gene) of Chayote v1 genome