CuGenDBv2

Gene ID	Sed0011072
Organism	Sechium edule (Chayote v1)
Description	RNA polymerase II elongation factor ELL3 isoform 1
Genome location	LG08:40135990..40136820
RNA-Seq Expression	Sed0011072
Synteny	Sed0011072
Gene Ontology terms	GO:0016021 - integral component of membrane (cellular component)
InterPro domains	NA

Homology

Show/hide homology

GenBank top hits

e value

%identity

Alignment

KAG7015562.1 hypothetical protein SDJN02_23198, partial [Cucurbita argyrosperma subsp. argyrosperma]

3.6e-85

75.34

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Query:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT
        ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT
Subjt:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT

Query:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI
         SDPN CHKWW P V++G TSGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKSSSVEIKWG LT+L R  + I
Subjt:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI

Query:  SLLCFSGLVFTASNFILCG
         LLCFSG+VF AS FILCG
Subjt:  SLLCFSGLVFTASNFILCG

XP_004149573.1 uncharacterized protein LOC101219596 [Cucumis sativus]

1.0e-84

74.66

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Query:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF
        MAETKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDEH FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+
Subjt:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF

Query:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP
        T SDP  C KWW PAV +G TSGV V  VQ+KLW+YWKA G+L++EK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMKSSSVEIKWG LT+  R  I 
Subjt:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP

Query:  ISLLCFSGLVFTASNFILCGF
        ISLL FS ++F  S FILCGF
Subjt:  ISLLCFSGLVFTASNFILCGF

XP_008449068.1 PREDICTED: uncharacterized protein LOC103491049 [Cucumis melo]

3.6e-85

75.57

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Query:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF
        MA+TKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDEH FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+
Subjt:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF

Query:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP
        T SDP  C KWW PAV +G TSGV V  VQ+KLW+YWKA G+L+REKSENRALTRC QELRMKG CF+LSKEPQ+GNRMKSSSVEIKWG LT+  R  I 
Subjt:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP

Query:  ISLLCFSGLVFTASNFILCGF
        ISLL FS +VF AS FILCGF
Subjt:  ISLLCFSGLVFTASNFILCGF

XP_022932317.1 uncharacterized protein LOC111438709 [Cucurbita moschata]

4.6e-85

75.34

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Query:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT
        ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT
Subjt:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT

Query:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI
         SDPN CHKWW P V++G TSGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKSSSVEIKWG LT L R  + I
Subjt:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI

Query:  SLLCFSGLVFTASNFILCG
         LLCFSG+VF AS FILCG
Subjt:  SLLCFSGLVFTASNFILCG

XP_038905570.1 uncharacterized protein LOC120091553 [Benincasa hispida]

1.0e-87

76.47

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Query:  MAETKDSSGHIVEIPVEQDNY-QNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF
        MAETKDS  HIVEIPVEQ+N+ QNQN    MI+VIQ HPLRQISESSGHLLLLKLWQRDEH FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+
Subjt:  MAETKDSSGHIVEIPVEQDNY-QNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF

Query:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP
        T SDPN C KWW PAV++G TSGV V  VQ+KLW+YWKA+G+L+REK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMKSSSVEIKWG LT+  R  I 
Subjt:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP

Query:  ISLLCFSGLVFTASNFILCGF
        I LL FS +VF AS FILC F
Subjt:  ISLLCFSGLVFTASNFILCGF

TrEMBL top hits

e value

%identity

Alignment

A0A0A0L2U7 Uncharacterized protein

5.0e-85

74.66

Show/hide

Query:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF
        MAETKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDEH FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+
Subjt:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF

Query:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP
        T SDP  C KWW PAV +G TSGV V  VQ+KLW+YWKA G+L++EK+ENRALTRCVQELRMKG CF+LSKEPQ+GNRMKSSSVEIKWG LT+  R  I 
Subjt:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP

Query:  ISLLCFSGLVFTASNFILCGF
        ISLL FS ++F  S FILCGF
Subjt:  ISLLCFSGLVFTASNFILCGF

A0A1S3BL81 uncharacterized protein LOC103491049

1.7e-85

75.57

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Query:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF
        MA+TKDS + HIVEIPVEQ+N+  QN   +MI+VIQ HPLRQISESSGHLLLLKLWQRDEH FGLRIG +ETK+ESLKQQIFQLCC+FFLFHAL+LT L+
Subjt:  MAETKDS-SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLF

Query:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP
        T SDP  C KWW PAV +G TSGV V  VQ+KLW+YWKA G+L+REKSENRALTRC QELRMKG CF+LSKEPQ+GNRMKSSSVEIKWG LT+  R  I 
Subjt:  TCSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IP

Query:  ISLLCFSGLVFTASNFILCGF
        ISLL FS +VF AS FILCGF
Subjt:  ISLLCFSGLVFTASNFILCGF

A0A2P6QLA8 Uncharacterized protein

2.0e-62

56.11

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Query:  MAETKDSSGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT
        MAE KD   H+VEIPV++++ Q  +  + +I+ IQ HPL +ISES GHLLLLKLW+R+E  FG RI  +ET+++ ++++IFQLCC+F +FHA  LT LFT
Subjt:  MAETKDSSGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT

Query:  C---SDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--
            S+  +C KWW P++    TS V V  VQV LW YWK  G+L+REK ENRAL RC+QELRMKG  FDLSKEPQ G R+KSSSVEIKW  +T+  +  
Subjt:  C---SDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--

Query:  IPISLLCFSGLVFTASNFILC
        I I L+CF+GLVF AS  +LC
Subjt:  IPISLLCFSGLVFTASNFILC

A0A6J1EWB5 uncharacterized protein LOC111438709

2.2e-85

75.34

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Query:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT
        ETKDS  + H+VEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT
Subjt:  ETKDS--SGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT

Query:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI
         SDPN CHKWW P V++G TSGV V  VQ+KLW+YWKA+ +L+REKSENRALTRCVQELRMKG CF+LSKEPQ+G+RMKSSSVEIKWG LT L R  + I
Subjt:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI

Query:  SLLCFSGLVFTASNFILCG
         LLCFSG+VF AS FILCG
Subjt:  SLLCFSGLVFTASNFILCG

A0A6J1HN07 uncharacterized protein LOC111465114

2.5e-84

75.34

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Query:  ETKDSSG--HIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT
        ETKDS    HIVEIP E     NQN   +MI+VI+QHPLRQISESSGHLLLLKLWQR+EH FGLRIG +ETKLESLKQQIFQLCCYFFLFHAL+LT LFT
Subjt:  ETKDSSG--HIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFT

Query:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI
         SDPN CHKWW P V++G TSGV V  VQ+KLW+YWKA+ +L+REKSENRALTR VQELRMKG CF+LSKEPQ+G+RMKSSSVEIKWG LT+L R  + I
Subjt:  CSDPNACHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFR--IPI

Query:  SLLCFSGLVFTASNFILCG
         LLCFSG+VF AS FILCG
Subjt:  SLLCFSGLVFTASNFILCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT3G12870.1 unknown protein

1.6e-22

35.94

Show/hide

Query:  QHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCS-------DPNACHKWWAPAVSVGGTSGVMVAAV
        +HPL QI+++  H LLLK W ++E     R+  +E++++S++++I QL  +FFLFH+++L  LF  S         +AC + W P++    +S  ++ AV
Subjt:  QHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCS-------DPNACHKWWAPAVSVGGTSGVMVAAV

Query:  QVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEI----KWGALTFLFRIPISLLCFSGLVFTASNFILC
        + K  V       LEREK + + L +CV+EL+ KG  FDL KE     R KS  VE     KW A  F+     S+ C   LV      ILC
Subjt:  QVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEI----KWGALTFLFRIPISLLCFSGLVFTASNFILC

AT5G56120.1 unknown protein

2.3e-58

52.52

Show/hide

Query:  MAETKDSSGHIVEIPVEQDNYQNQNQKLM---------MITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFH
        MA TKDS  H+VEIPV++++ + Q Q+ +         ++ VIQQHPL +ISES GHLLLLKLWQR+E  F  R+  +E++LES+K++IFQLCC+F +FH
Subjt:  MAETKDSSGHIVEIPVEQDNYQNQNQKLM---------MITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFH

Query:  ALALTTLF--TCSD------PNA-CHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSS
            T ++  +CSD       NA C KWW P+     TS V+V  VQ KL+V+WK    + RE+++NR LTRCV ELRMKG  FDLSKEP  G RMKSSS
Subjt:  ALALTTLF--TCSD------PNA-CHKWWAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSS

Query:  VEIKWGALTFL--FRIPISLLCFSGLVFTASNFILCGF
        VEIKW  +T+   + I I LLC +GL F  S FILCGF
Subjt:  VEIKWGALTFL--FRIPISLLCFSGLVFTASNFILCGF

Sequences

Show/hide sequences

CDS sequence

Show/hide CDS sequence

ATGGCCGAAACCAAAGATTCAAGTGGCCACATAGTCGAAATCCCAGTAGAACAAGATAATTATCAGAATCAGAATCAAAAGCTTATGATGATCACCGTAATCCAACAGCA
CCCACTGAGGCAAATTTCCGAAAGCTCCGGCCATCTATTGTTGTTAAAACTCTGGCAACGAGACGAGCATCGGTTCGGCCTCCGAATCGGTTTCCAAGAGACGAAACTAG
AGTCTCTAAAGCAACAAATCTTCCAACTGTGCTGCTACTTCTTCCTGTTCCACGCCCTCGCTTTAACGACATTGTTCACTTGCTCTGATCCGAATGCATGCCACAAATGG
TGGGCTCCGGCAGTGTCGGTGGGGGGGACGTCGGGGGTGATGGTGGCGGCCGTGCAGGTGAAGTTGTGGGTGTATTGGAAGGCGGCAGGGGAGTTGGAGAGGGAGAAGAG
TGAGAACAGAGCGCTTACAAGATGTGTTCAAGAGCTGAGAATGAAAGGGTGTTGTTTTGATTTGAGTAAAGAACCCCAAGTTGGGAACAGGATGAAGAGCTCAAGTGTGG
AGATCAAATGGGGGGCCCTCACCTTCCTCTTTAGGATTCCCATTTCTCTTCTTTGCTTTTCAGGCCTTGTCTTTACTGCTTCTAACTTCATTCTTTGTGGCTTTTAG

mRNA sequence

Show/hide mRNA sequence

GTCCAACAAATCTGAATTTCTAATGGCCGAAACCAAAGATTCAAGTGGCCACATAGTCGAAATCCCAGTAGAACAAGATAATTATCAGAATCAGAATCAAAAGCTTATGA
TGATCACCGTAATCCAACAGCACCCACTGAGGCAAATTTCCGAAAGCTCCGGCCATCTATTGTTGTTAAAACTCTGGCAACGAGACGAGCATCGGTTCGGCCTCCGAATC
GGTTTCCAAGAGACGAAACTAGAGTCTCTAAAGCAACAAATCTTCCAACTGTGCTGCTACTTCTTCCTGTTCCACGCCCTCGCTTTAACGACATTGTTCACTTGCTCTGA
TCCGAATGCATGCCACAAATGGTGGGCTCCGGCAGTGTCGGTGGGGGGGACGTCGGGGGTGATGGTGGCGGCCGTGCAGGTGAAGTTGTGGGTGTATTGGAAGGCGGCAG
GGGAGTTGGAGAGGGAGAAGAGTGAGAACAGAGCGCTTACAAGATGTGTTCAAGAGCTGAGAATGAAAGGGTGTTGTTTTGATTTGAGTAAAGAACCCCAAGTTGGGAAC
AGGATGAAGAGCTCAAGTGTGGAGATCAAATGGGGGGCCCTCACCTTCCTCTTTAGGATTCCCATTTCTCTTCTTTGCTTTTCAGGCCTTGTCTTTACTGCTTCTAACTT
CATTCTTTGTGGCTTTTAGACTGACTGGTCACTGTTGTACACCACAAGACTAGTGTTGTTCAGTGTCTAATTATAACCAACACTGCTTCTGTGCCCACCTTCTTTCGTTT
TTCTACCCAAAATGGATGGCCACATGTAACTTTCTGGCTTGTTACATTTATTTATACTCCA

Protein sequence

Show/hide protein sequence

MAETKDSSGHIVEIPVEQDNYQNQNQKLMMITVIQQHPLRQISESSGHLLLLKLWQRDEHRFGLRIGFQETKLESLKQQIFQLCCYFFLFHALALTTLFTCSDPNACHKW
WAPAVSVGGTSGVMVAAVQVKLWVYWKAAGELEREKSENRALTRCVQELRMKGCCFDLSKEPQVGNRMKSSSVEIKWGALTFLFRIPISLLCFSGLVFTASNFILCGF

Sed0011072 (gene) of Chayote v1 genome