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Sed0011093 (gene) of Chayote v1 genome

Gene IDSed0011093
OrganismSechium edule (Chayote v1)
Descriptiontranscription factor PRE3-like
Genome locationLG01:13376357..13377590
RNA-Seq ExpressionSed0011093
SyntenySed0011093
Gene Ontology termsGO:0006355 - regulation of transcription, DNA-templated (biological process)
GO:0040008 - regulation of growth (biological process)
GO:0005634 - nucleus (cellular component)
GO:0046983 - protein dimerization activity (molecular function)
InterPro domainsIPR011598 - Myc-type, basic helix-loop-helix (bHLH) domain
IPR036638 - Helix-loop-helix DNA-binding domain superfamily
IPR044293 - Transcription factor PRE


Homology Show/hide homology
GenBank top hitse value%identityAlignment
KAG6573012.1 putative serine/threonine-protein kinase PBL3, partial [Cucurbita argyrosperma subsp. sororia]1.9e-3291.11Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

KAG7012197.1 Transcription factor PRE3, partial [Cucurbita argyrosperma subsp. argyrosperma]5.5e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELL TSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

XP_004152438.1 transcription factor PRE3 [Cucumis sativus]4.2e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS +VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

XP_022955105.1 transcription factor PRE3-like [Cucurbita moschata]1.9e-3291.11Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

XP_023542851.1 transcription factor PRE3-like [Cucurbita pepo subsp. pepo]2.5e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS A+RISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

TrEMBL top hitse value%identityAlignment
A0A0A0LQQ1 BHLH domain-containing protein2.0e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS +VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

A0A1S4DU40 transcription factor PRE3-like2.7e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS  VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

A0A5D3BJ22 Transcription factor PRE3-like4.2e-3089.53Show/hide
Query:  SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        SRSRQS  VRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

A0A6J1GU92 transcription factor PRE3-like9.1e-3391.11Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSGRSRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

A0A6J1K5U5 transcription factor PRE3-like7.7e-3290Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSG SRSRQS AVRISDEQITDLVHKLQQLLPEIR+R SDKVSAAKVLQETC  IR LH+EVDDLSERLSELLATSDTAQA IIRSLLTQ
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

SwissProt top hitse value%identityAlignment
A2Z730 Transcription factor ILI73.7e-2368.89Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL
        MS RSRSR S A RI+DEQI DLV KLQ LLPE R R +D+V +A+VLQETC  IR LH+EVDDLSERL+ELLA +D  TAQA +IR LL
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL

B8APB5 Transcription factor ILI61.5e-2473.03Show/hide
Query:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL
        S RSRSRQSG+ RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETC  IR LH+EVDDLSERLSELLATSD  +AQA IIRSLL
Subjt:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL

Q0DUR2 Transcription factor ILI61.5e-2473.03Show/hide
Query:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL
        S RSRSRQSG+ RI+DEQI+DLV KLQ LLPE R R +D+V +++VLQETC  IR LH+EVDDLSERLSELLATSD  +AQA IIRSLL
Subjt:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL

Q8GW32 Transcription factor PRE66.7e-2571.74Show/hide
Query:  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL
        MS R  SRSRQSG+ RISD+QI+DLV KLQ L+PE+R R+SDKVSA+KVLQETC  IR LH+EVDDLS+RLSELLA++D  +A+A IIRSLL
Subjt:  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL

Q9CA64 Transcription factor PRE39.4e-2777.42Show/hide
Query:  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R SR+SDKVSAA+VLQ+TC  IR LH+EVDDLSERLSELLA SDTAQA +IRSLLTQ
Subjt:  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

Arabidopsis top hitse value%identityAlignment
AT1G26945.1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein4.8e-2671.74Show/hide
Query:  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL
        MS R  SRSRQSG+ RISD+QI+DLV KLQ L+PE+R R+SDKVSA+KVLQETC  IR LH+EVDDLS+RLSELLA++D  +A+A IIRSLL
Subjt:  MSGR--SRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSD--TAQADIIRSLL

AT1G74500.1 activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 16.7e-2877.42Show/hide
Query:  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        MSG RSRSRQ SG  RIS++QI DL+ KLQQLLPE+R SR+SDKVSAA+VLQ+TC  IR LH+EVDDLSERLSELLA SDTAQA +IRSLLTQ
Subjt:  MSG-RSRSRQ-SGAVRISDEQITDLVHKLQQLLPEIR-SRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

AT3G28857.1 basic helix-loop-helix (bHLH) DNA-binding family protein1.1e-1960.44Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRS-RQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELL--ATSDTAQADIIRSLL
        MS R   + S A RISD+Q+ DLV KL+Q LPEI   R+SDKVSA+KVLQETC  IR+LH+EVD+LS+RLS+LL     D+ +A +IRSLL
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRS-RQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELL--ATSDTAQADIIRSLL

AT3G47710.1 BANQUO 31.9e-2265.56Show/hide
Query:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ
        S +SRSRQ+GA  I+DEQI DLV +L +LLPE+  +R+S KVSA++VLQETC  IR L KEVDDLSERLS+LL ++D+AQA +IRSLL Q
Subjt:  SGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ

AT5G39860.1 basic helix-loop-helix (bHLH) DNA-binding family protein9.7e-1959.34Show/hide
Query:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLAT--SDTAQADIIRSLL
        MS R   + S A RISD Q+ DLV KL+Q+LPEI + R+SDK SA+KVLQETC  IR L++EVD+LSERLS+LL +   D+ +A +IRSLL
Subjt:  MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEI-RSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLAT--SDTAQADIIRSLL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGTCGGGCAGATCTCGTTCTAGACAATCCGGTGCTGTAAGAATCTCCGACGAGCAGATCACCGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGAAGCCG
CCAATCTGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAAATGCATTCGAAGGCTACACAAAGAAGTGGACGATCTGAGTGAGAGACTGTCCGAGTTGTTGG
CCACGTCGGACACAGCCCAAGCCGACATTATTAGAAGCTTGCTCACGCAGTGA
mRNA sequenceShow/hide mRNA sequence
ATGTCGGGCAGATCTCGTTCTAGACAATCCGGTGCTGTAAGAATCTCCGACGAGCAGATCACCGACCTCGTTCACAAGCTGCAACAGCTCTTGCCCGAGATTCGAAGCCG
CCAATCTGACAAGGTTTCAGCAGCAAAGGTTTTGCAAGAGACATGCAAATGCATTCGAAGGCTACACAAAGAAGTGGACGATCTGAGTGAGAGACTGTCCGAGTTGTTGG
CCACGTCGGACACAGCCCAAGCCGACATTATTAGAAGCTTGCTCACGCAGTGA
Protein sequenceShow/hide protein sequence
MSGRSRSRQSGAVRISDEQITDLVHKLQQLLPEIRSRQSDKVSAAKVLQETCKCIRRLHKEVDDLSERLSELLATSDTAQADIIRSLLTQ