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Sed0011119 (gene) of Chayote v1 genome

Gene IDSed0011119
OrganismSechium edule (Chayote v1)
Descriptionlight-harvesting complex-like protein OHP1, chloroplastic
Genome locationLG04:26205861..26206449
RNA-Seq ExpressionSed0011119
SyntenySed0011119
Gene Ontology termsGO:0009535 - chloroplast thylakoid membrane (cellular component)
InterPro domainsNA


Homology Show/hide homology
GenBank top hitse value%identityAlignment
XP_004137791.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucumis sativus]1.6e-4284.3Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ +L SSL PARA T N  D R CLFQIG SVR N+SRAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNKGILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

XP_022145630.1 light-harvesting complex-like protein OHP1, chloroplastic [Momordica charantia]9.7e-5392.44Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+ MLSSSLLPARAPTGNR DGRLCLFQIGSVR NNSRARVPFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_022934608.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita moschata]5.9e-5089.08Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_023526506.1 light-harvesting complex-like protein OHP1, chloroplastic [Cucurbita pepo subsp. pepo]2.9e-4988.24Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS T+LSSSLLPA AP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

XP_038905156.1 light-harvesting complex-like protein OHP1, chloroplastic [Benincasa hispida]2.4e-5190.76Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+ +LSSSLLPARAP  ++ DGRLCLFQIGSVR NNSR+RVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAE+WNSRACMIGLIGIFVVELILN
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

TrEMBL top hitse value%identityAlignment
A0A0A0LAI0 Uncharacterized protein7.5e-4384.3Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ +L SSL PARA T N  D R CLFQIG SVR N+SRAR  FR+Q AAKPPAGVELPKVEPKF+APFLGFTKTAEIWNSRACMIGLIGIFVVELI
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNKGILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

A0A5A7TRS8 High-light-induced protein8.3e-4285.12Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI
        MASS+ +L SSL PARA T N+ DGR  LFQIG SVR NNSRAR  FRVQ AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIG FVVELI
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIG-SVRTNNSRARVPFRVQ-AAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELI

Query:  LNKGILQVIGVDVGKGLDLPL
        LNK ILQVIGVDVGKGLDLPL
Subjt:  LNKGILQVIGVDVGKGLDLPL

A0A6J1CV10 light-harvesting complex-like protein OHP1, chloroplastic4.7e-5392.44Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS+ MLSSSLLPARAPTGNR DGRLCLFQIGSVR NNSRARVPFRVQAAK PAGVELPKVEPKFEAPFLGFTKTAEIWNSRACM+GL+GIF+VELIL+
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVDVGKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

A0A6J1F851 light-harvesting complex-like protein OHP1, chloroplastic2.9e-5089.08Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

A0A6J1J0W8 light-harvesting complex-like protein OHP1, chloroplastic2.9e-5089.08Show/hide
Query:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        MASS T+LSSSLLPARAP  +R DGRLCLFQ+GSVR NN RAR PFRVQAAKPPAGVELPKV+PKFEAPFLGFTKTAEIWNSRA MIGLIGIFVVELILN
Subjt:  MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGILQVIGVD+GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

SwissProt top hitse value%identityAlignment
O81208 Light-harvesting complex-like protein OHP1, chloroplastic1.4e-2556.3Show/hide
Query:  STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        S++ LSSSL    +       GR   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILN
Subjt:  STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGIL++IGV++GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL

Arabidopsis top hitse value%identityAlignment
AT5G02120.1 one helix protein9.8e-2756.3Show/hide
Query:  STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN
        S++ LSSSL    +       GR   LC           +R + PF V+AAK P GV +PK +PK +  FLGFT+TAEIWNSRACMIGLIG F+VELILN
Subjt:  STTMLSSSLLPARAPTGNRPDGR---LCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILN

Query:  KGILQVIGVDVGKGLDLPL
        KGIL++IGV++GKGLDLPL
Subjt:  KGILQVIGVDVGKGLDLPL


Sequences Show/hide sequences
CDS sequenceShow/hide CDS sequence
ATGGCGTCCTCCACTACGATGCTATCATCTTCTCTTCTTCCGGCAAGGGCTCCGACCGGTAACCGTCCAGACGGCCGACTCTGTCTCTTCCAAATTGGTTCTGTCCGTAC
AAACAACAGCAGGGCTCGTGTCCCCTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCCAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAACTCCAGAGCCTGCATGATAGGTCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGAT
GTTGGGAAAGGCTTGGATCTTCCTCTGTGA
mRNA sequenceShow/hide mRNA sequence
ATGGCGTCCTCCACTACGATGCTATCATCTTCTCTTCTTCCGGCAAGGGCTCCGACCGGTAACCGTCCAGACGGCCGACTCTGTCTCTTCCAAATTGGTTCTGTCCGTAC
AAACAACAGCAGGGCTCGTGTCCCCTTTAGGGTTCAGGCCGCAAAGCCTCCGGCTGGAGTTGAATTGCCCAAAGTAGAGCCGAAATTTGAAGCCCCGTTTCTTGGATTCA
CTAAAACTGCTGAAATCTGGAACTCCAGAGCCTGCATGATAGGTCTCATTGGGATATTCGTAGTAGAGCTGATATTGAACAAAGGAATACTTCAGGTGATTGGAGTTGAT
GTTGGGAAAGGCTTGGATCTTCCTCTGTGA
Protein sequenceShow/hide protein sequence
MASSTTMLSSSLLPARAPTGNRPDGRLCLFQIGSVRTNNSRARVPFRVQAAKPPAGVELPKVEPKFEAPFLGFTKTAEIWNSRACMIGLIGIFVVELILNKGILQVIGVD
VGKGLDLPL