CuGenDBv2

Gene ID	Sed0011128
Organism	Sechium edule (Chayote v1)
Description	50S ribosomal protein L35
Genome location	LG05:1430618..1435354
RNA-Seq Expression	Sed0011128
Synteny	Sed0011128
Gene Ontology terms	GO:0006412 - translation (biological process) GO:0005840 - ribosome (cellular component) GO:0003735 - structural constituent of ribosome (molecular function)
InterPro domains	IPR021137 - Ribosomal protein L35 IPR037229 - Ribosomal protein L35 superfamily

Homology

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GenBank top hits

e value

%identity

Alignment

KAG7036224.1 hypothetical protein SDJN02_03026 [Cucurbita argyrosperma subsp. argyrosperma]

1.2e-72

87.5

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHSAPSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRSPL PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+K YSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+PGTVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

XP_022156090.1 uncharacterized protein LOC111023059 [Momordica charantia]

1.4e-73

87.5

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC KLRSAAAKP Q+ HS+SSTRRIFHS+PSLY PLH +PNNLSSRS+FNASL  HSS AA+QCIRS  LPLSVVQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTKMKFYSSYKSRFW+MKDGSIKRRKEGKRHNAHLKSKKSKRRLR+P TVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

XP_022931031.1 uncharacterized protein LOC111437349 [Cucurbita moschata]

1.0e-71

86.9

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHSAPSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRS L PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+K YSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+PGTVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

XP_022996248.1 uncharacterized protein LOC111491530 [Cucurbita maxima]

1.7e-71

86.31

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHS PSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRS L PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+KFYSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+P TVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

XP_023532529.1 uncharacterized protein LOC111794661 [Cucurbita pepo subsp. pepo]

5.0e-71

86.31

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHSAPSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRS L PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+K YSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+P TVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

TrEMBL top hits

e value

%identity

Alignment

A0A0A0LBT5 Uncharacterized protein

2.2e-64

80.84

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLR C KLRSAAAKP QI +S+SSTRRIFHSAPSLY PLH S NNL+SRSLFNAS   HS  AA+QCIRS  LPLSVVQVRHVSSR+R  +RKP TPATS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LRKP  VPLAYAKVMKKLNFC
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC

A0A1S3CDR4 uncharacterized protein LOC103499252

8.9e-66

82.04

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC KLRSAAAKP QI  S+SSTRRIFHSAPSLY PLH SPNNL+SRSLFNA    HS  AA+QCIRS LLPLSVVQVRHVSSR+R  +RKP TPATS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC
        KLKKTK+K YSSYKSRFW+MKDGSIKRR EGKRHNAH KSK+SKR+LRKP  VPLAYAKVMKKLNFC
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC

A0A6J1DPB8 uncharacterized protein LOC111023059

6.8e-74

87.5

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC KLRSAAAKP Q+ HS+SSTRRIFHS+PSLY PLH +PNNLSSRS+FNASL  HSS AA+QCIRS  LPLSVVQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTKMKFYSSYKSRFW+MKDGSIKRRKEGKRHNAHLKSKKSKRRLR+P TVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

A0A6J1ESK5 uncharacterized protein LOC111437349

4.9e-72

86.9

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHSAPSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRS L PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+K YSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+PGTVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

A0A6J1KAA4 uncharacterized protein LOC111491530

8.4e-72

86.31

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Query:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS
        MLRWC+KLRSAAAKP QI HS+SSTRRIFHS PSLY PLH SPNNLSSRSL NASL  HSS AA+QCIRS L PL  VQVRHVSSRER KRRKPMTP TS
Subjt:  MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATS

Query:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG
        KLKKTK+KFYSSYKSRFWV KDGSIKRRKEGKRHNAHLKSKK+KRRLR+P TVPLAYAKVMKKLNFCG
Subjt:  KLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

SwissProt top hits	e value	%identity	Alignment
No hits found

Arabidopsis top hits

e value

%identity

Alignment

AT5G45590.1 Ribosomal protein L35

2.1e-30

49.43

Show/hide

Query:  MLRWCTKLRSAAAKPPQ-ISHSISSTRRIFHSAPSLYHPLHLSPNNLS-SRSLFNASLPAHSSFAA-FQCIRSPLLPLSVVQVRHVSSRER----AKRRK
        M R+CTKLRS + +  + +S   +S  R+ H +PS     HL+   L  + S   + +PA   F +    + +  +P   VQVR+++S+E+     K+ +
Subjt:  MLRWCTKLRSAAAKPPQ-ISHSISSTRRIFHSAPSLYHPLHLSPNNLS-SRSLFNASLPAHSSFAA-FQCIRSPLLPLSVVQVRHVSSRER----AKRRK

Query:  PMTPATSKLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC
        P TP TSK+KK K+KFYSS+K RF  + DG+I+R KEGKRHNAHLKSKKSKRRLR+PG VP AYAKVMKKLNFC
Subjt:  PMTPATSKLKKTKMKFYSSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFC

Sequences

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CDS sequence

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ATGCTCCGGTGGTGCACGAAGCTCCGATCTGCGGCGGCGAAACCACCTCAAATTTCACACTCCATTTCTTCCACCCGCAGGATCTTCCACTCTGCTCCATCACTGTACCA
TCCTCTCCATCTCTCTCCGAATAATCTGAGTTCTAGGTCACTTTTCAATGCATCACTACCGGCTCATTCTTCATTCGCGGCTTTCCAGTGTATTCGTTCTCCGCTATTGC
CTCTCTCTGTTGTTCAAGTGCGTCATGTTTCGTCAAGAGAGCGAGCAAAGAGGAGAAAGCCGATGACGCCAGCTACATCCAAATTGAAGAAAACTAAGATGAAATTTTAC
TCGTCTTACAAGTCTAGGTTTTGGGTGATGAAGGATGGGAGCATCAAACGTCGAAAGGAAGGAAAAAGGCACAATGCTCATCTCAAGTCCAAAAAATCTAAGCGTAGACT
GAGAAAACCAGGTACTGTTCCATTAGCTTATGCAAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAA

mRNA sequence

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AAAAAATTGGGAAAGCGCCAATACCAATCTTCGTCAGGTTCAGGTTTCTTTTCTCTCTCTCTGAAAGAATACCCCTTCGCCATTGGAGTACGACGGCGACGACGATGCTC
CGGTGGTGCACGAAGCTCCGATCTGCGGCGGCGAAACCACCTCAAATTTCACACTCCATTTCTTCCACCCGCAGGATCTTCCACTCTGCTCCATCACTGTACCATCCTCT
CCATCTCTCTCCGAATAATCTGAGTTCTAGGTCACTTTTCAATGCATCACTACCGGCTCATTCTTCATTCGCGGCTTTCCAGTGTATTCGTTCTCCGCTATTGCCTCTCT
CTGTTGTTCAAGTGCGTCATGTTTCGTCAAGAGAGCGAGCAAAGAGGAGAAAGCCGATGACGCCAGCTACATCCAAATTGAAGAAAACTAAGATGAAATTTTACTCGTCT
TACAAGTCTAGGTTTTGGGTGATGAAGGATGGGAGCATCAAACGTCGAAAGGAAGGAAAAAGGCACAATGCTCATCTCAAGTCCAAAAAATCTAAGCGTAGACTGAGAAA
ACCAGGTACTGTTCCATTAGCTTATGCAAAGGTAATGAAGAAGCTCAACTTTTGTGGTTAAATTATTATTGGTAGTTTCAAAATCACTATTGAGTTATTAGCTCCTCTTT
TGGATTTCAAATTCAGATCCCTAGAACAAAATAAGATCCAGAACAATTACTTCTTTATATGTAGTTGGATGATAGAAATGACTGATTATAAATGTAGTGATCTTTTTCAT
TGTCTAGCTGTATCAAGAGTTCGTCCTAACAGTGTCAAATACTATTTTCTATCACATGAGATGTGGCTTGCAATTAGCGATGTCCACGAGACGACGAGGACCTCGTCTCT
TCCTTCCATTTAATTTTGTACCTCGAAATTCTTTAAATTTCTGGAGCTCTATGGGAAGTTTGTGGAGATCGA

Protein sequence

Show/hide protein sequence

MLRWCTKLRSAAAKPPQISHSISSTRRIFHSAPSLYHPLHLSPNNLSSRSLFNASLPAHSSFAAFQCIRSPLLPLSVVQVRHVSSRERAKRRKPMTPATSKLKKTKMKFY
SSYKSRFWVMKDGSIKRRKEGKRHNAHLKSKKSKRRLRKPGTVPLAYAKVMKKLNFCG

Sed0011128 (gene) of Chayote v1 genome